Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 3.9e-76 289.3 335 100.0
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 6.4e-71 271.9 335 97.0
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.6e-69 267.3 335 95.8
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.3e-63 247.7 335 93.4
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 5.4e-62 242.3 351 89.5
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.2e-61 241.1 335 92.2
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 2.1e-61 240.4 335 91.0
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.0e-60 238.0 351 81.5
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 3.6e-58 229.6 332 91.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.3e-55 221.1 324 92.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.2e-55 220.3 329 91.2
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 8.4e-55 218.4 322 88.8
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.4e-54 217.6 323 91.0
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.9e-54 217.2 326 91.1
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.4e-54 216.9 335 89.9
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 2.4e-54 216.9 333 90.4
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 5.4e-54 215.7 326 91.7
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 5.4e-54 215.7 324 90.1
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.4e-54 215.7 326 90.8
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 9.3e-54 214.9 328 90.9
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.6e-53 214.2 333 90.4
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.6e-53 214.2 333 90.4
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 2.1e-53 213.8 334 89.5
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.7e-53 213.4 335 89.3
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.7e-53 213.4 329 90.9
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.5e-53 213.0 329 90.6
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 4.6e-53 212.6 322 90.7
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 4.6e-53 212.6 328 90.5
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 4.6e-53 212.6 326 89.3
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 6.0e-53 212.2 331 89.7
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 6.0e-53 212.2 328 89.9
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 6.0e-53 212.2 335 80.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 6.0e-53 212.2 322 91.0
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.0e-53 212.2 322 89.4
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 7.8e-53 211.8 321 90.3
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.0e-52 211.5 326 90.2
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.0e-52 211.5 320 91.2
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.0e-52 211.5 325 90.8
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.0e-52 211.5 306 94.8
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.3e-52 211.1 322 91.9
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.7e-52 210.7 326 86.5
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.3e-52 210.3 329 90.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 3.0e-52 209.9 322 90.4
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 3.9e-52 209.5 324 89.8
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 3.9e-52 209.5 324 89.8
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 3.9e-52 209.5 327 90.5
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.1e-51 208.0 325 90.2
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.1e-51 208.0 322 90.1
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 1.5e-51 207.6 322 89.4
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.5e-51 207.6 324 88.9
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.9e-51 207.2 318 90.9
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.9e-51 207.2 305 93.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.9e-51 207.2 323 89.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.9e-51 207.2 324 89.5
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.9e-51 207.2 321 88.5
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.5e-51 206.8 330 88.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 3.3e-51 206.5 319 91.8
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 3.3e-51 206.5 320 87.5
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 4.3e-51 206.1 327 90.2
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.3e-51 206.1 330 87.9
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 5.6e-51 205.7 321 90.0
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 5.6e-51 205.7 321 91.0
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.3e-51 205.3 308 92.5
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 7.3e-51 205.3 320 90.6
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 7.3e-51 205.3 322 90.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 7.3e-51 205.3 323 89.2
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 7.3e-51 205.3 305 94.1
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 9.6e-51 204.9 305 93.4
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 9.6e-51 204.9 293 80.2
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.3e-50 204.5 329 86.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.3e-50 204.5 325 89.5
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.1e-50 203.8 329 88.8
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.1e-50 203.8 329 88.8
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.8e-50 203.4 340 78.5
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.6e-50 203.0 318 89.0
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.2e-50 202.2 322 89.1
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 1.1e-49 201.4 320 87.8
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.1e-49 201.4 326 89.3
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.4e-49 201.1 327 86.5
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.4e-49 200.3 305 93.1
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 4.0e-49 199.5 301 94.0
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 5.3e-49 199.1 320 88.4
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 6.9e-49 198.7 322 87.6
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.9e-49 198.7 313 87.9
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.2e-48 198.0 320 76.2
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.0e-48 197.2 322 87.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.0e-48 197.2 356 64.6
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.6e-48 196.8 329 87.2
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.6e-48 196.8 331 86.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.4e-48 196.4 243 90.5
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 5.8e-48 195.7 328 84.5
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.3e-47 194.5 320 88.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 2.9e-47 193.4 341 60.7
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.8e-47 193.0 243 88.1
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.9e-47 192.6 308 90.9
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 4.9e-47 192.6 319 89.0
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 6.4e-47 192.2 329 87.8
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 8.4e-47 191.8 325 87.7
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.1e-46 191.4 364 66.5
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.4e-46 191.0 319 88.4
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.4e-46 191.0 304 91.8
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.4e-46 191.0 319 88.7
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.4e-46 191.0 298 92.3
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.9e-46 190.7 319 88.7
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.9e-46 190.7 326 87.1
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.4e-46 190.3 308 91.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 3.2e-46 189.9 319 88.7
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 5.4e-46 189.1 319 88.4
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 5.4e-46 189.1 319 88.4
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.1e-46 188.7 321 84.4
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 9.3e-46 188.3 326 85.3
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-45 188.0 305 91.1
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.6e-45 187.6 305 91.1
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.1e-45 187.2 305 91.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 3.5e-45 186.4 241 88.8
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.0e-45 185.7 326 84.7
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 6.0e-45 185.7 326 84.7
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.9e-44 183.0 328 74.7
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 7.4e-43 178.7 335 71.6
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.6e-42 177.6 327 86.2
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.6e-42 177.6 343 81.0
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.1e-42 177.2 331 83.7
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.8e-42 176.8 324 72.8
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 6.2e-42 175.6 250 68.0
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.4e-41 174.5 333 85.3
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.8e-41 174.1 322 87.0
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.1e-41 173.3 322 87.0
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-41 173.3 305 82.3
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.1e-41 173.3 305 82.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 9.0e-41 171.8 231 90.0
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 9.0e-41 171.8 331 68.9
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.6e-40 170.2 326 85.3
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 9.9e-40 168.3 327 80.7
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.7e-39 167.5 326 71.8
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.2e-39 167.2 316 86.4
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.9e-39 166.8 333 80.5
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 6.4e-39 165.6 327 82.6
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 8.4e-39 165.2 327 81.3
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.1e-38 164.9 98 81.6
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.4e-38 163.7 347 72.6
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 2.4e-38 163.7 315 86.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.2e-38 163.3 97 81.4
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.1e-37 160.6 97 81.4
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.3e-36 157.1 104 78.8
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.3e-36 157.1 109 72.5
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.3e-36 157.1 109 72.5
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.9e-36 156.4 105 75.2
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 5.1e-36 156.0 98 78.6
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 5.1e-36 156.0 98 78.6
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.1e-35 154.8 257 78.6
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 7.4e-35 152.1 305 52.5
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.6e-34 151.0 82 86.6
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.7e-34 149.8 253 78.3
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 2.4e-33 147.1 94 77.7
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 5.3e-33 146.0 86 82.6
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 5.3e-33 146.0 103 69.9
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.3e-28 131.3 306 77.8
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 6.7e-28 129.0 321 75.4
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.3e-27 126.7 75 82.7
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 4.3e-27 126.3 107 57.9
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.5e-24 116.3 280 80.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.7e-18 97.8 248 72.6
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.8e-18 97.1 120 90.0
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.8e-18 97.1 67 70.1
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.4e-17 94.7 64 60.9
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.3e-17 92.8 78 64.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.0e-16 90.9 64 59.4
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.6e-16 90.5 120 54.2
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.9e-16 89.4 255 88.2
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 2.9e-15 87.0 52 76.9
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 7.2e-14 82.4 63 63.5
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 7.9e-13 79.0 39 89.7
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 5.1e-12 76.3 41 90.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.7e-10 71.2 41 82.9
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 1.4e-09 68.2 41 80.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 4.1e-09 66.6 50 72.0
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.6e-08 63.9 35 88.6
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 2.2e-07 60.8 35 82.9
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 3.2e-06 57.0 26 96.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 7.2e-06 55.8 31 80.6


User provided reference genes

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