Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.7e-67 260.0 226 100.0
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 9.1e-37 157.9 130 67.7
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 2.6e-28 129.8 115 65.2
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.0e-24 115.9 129 55.8
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.6e-23 113.2 131 56.5
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.3e-22 110.9 119 52.9
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.7e-22 109.4 112 57.1
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.3e-22 108.6 128 51.6
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.4e-21 107.5 112 56.2
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.8e-21 107.1 99 57.6
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.0e-19 101.3 116 50.0
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.3e-19 100.9 138 44.9
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.3e-19 100.9 114 49.1
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-19 100.5 123 48.8
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 5.0e-19 99.0 108 51.9
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 5.0e-19 99.0 123 49.6
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 6.5e-19 98.6 115 51.3
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 6.5e-19 98.6 123 49.6
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 6.5e-19 98.6 123 49.6
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 6.5e-19 98.6 116 51.7
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 8.5e-19 98.2 107 50.5
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.5e-18 97.4 112 50.9
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.9e-18 97.1 114 48.2
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 1.9e-18 97.1 117 49.6
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.5e-18 96.7 107 50.5
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 3.2e-18 96.3 110 49.1
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 4.2e-18 95.9 117 48.7
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 5.5e-18 95.5 84 58.3
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 9.4e-18 94.7 114 47.4
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 9.4e-18 94.7 123 46.3
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 9.4e-18 94.7 123 46.3
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 9.4e-18 94.7 114 47.4
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 9.4e-18 94.7 123 46.3
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 9.4e-18 94.7 123 46.3
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 9.4e-18 94.7 118 50.0
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.2e-17 94.4 117 49.6
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.6e-17 94.0 116 45.7
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.6e-17 94.0 124 44.4
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.6e-17 94.0 123 44.7
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.6e-17 94.0 123 46.3
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.1e-17 93.6 106 49.1
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-17 93.6 121 46.3
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-17 93.6 76 59.2
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.7e-17 93.2 123 46.3
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 3.6e-17 92.8 126 47.6
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 3.6e-17 92.8 84 59.5
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 4.7e-17 92.4 119 50.4
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 8.0e-17 91.7 76 57.9
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.0e-16 91.3 86 54.7
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.0e-16 91.3 96 55.2
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.8e-16 90.5 96 55.2
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 2.3e-16 90.1 94 54.3
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 3.0e-16 89.7 103 47.6
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.0e-16 89.7 111 51.4
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 5.2e-16 89.0 122 45.9
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 6.8e-16 88.6 122 44.3
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 8.8e-16 88.2 120 42.5
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.2e-15 87.8 106 48.1
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.5e-15 87.4 114 50.9
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 2.6e-15 86.7 125 44.8
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 2.6e-15 86.7 102 49.0
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 3.4e-15 86.3 95 53.7
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.4e-15 86.3 132 43.2
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.4e-15 85.9 91 54.9
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 5.7e-15 85.5 85 56.5
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 5.7e-15 85.5 79 57.0
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 5.7e-15 85.5 84 57.1
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 7.5e-15 85.1 77 59.7
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.3e-14 84.3 127 44.9
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.7e-14 84.0 68 60.3
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.7e-14 84.0 96 46.9
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.7e-14 84.0 96 46.9
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 2.2e-14 83.6 93 50.5
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 2.8e-14 83.2 106 47.2
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.7e-14 82.8 81 54.3
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 3.7e-14 82.8 96 53.1
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 4.8e-14 82.4 75 60.0
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 6.3e-14 82.0 101 52.5
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.3e-14 82.0 92 52.2
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 8.3e-14 81.6 94 53.2
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 8.3e-14 81.6 89 50.6
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.4e-13 80.9 85 51.8
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.4e-13 80.9 82 53.7
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.8e-13 80.5 86 54.7
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.8e-13 80.5 99 49.5
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.8e-13 80.5 94 51.1
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.8e-13 80.5 101 51.5
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 2.4e-13 80.1 90 51.1
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 3.1e-13 79.7 85 52.9
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.1e-13 79.7 92 51.1
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.1e-13 79.3 91 48.4
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 5.4e-13 79.0 91 49.5
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 7.0e-13 78.6 86 51.2
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 7.0e-13 78.6 80 55.0
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 7.0e-13 78.6 126 50.8
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 9.1e-13 78.2 75 57.3
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 9.1e-13 78.2 118 43.2
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 9.1e-13 78.2 88 51.1
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.6e-12 77.4 84 52.4
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.0e-12 77.0 87 48.3
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.0e-12 77.0 112 46.4
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 3.5e-12 76.3 116 43.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 4.5e-12 75.9 103 46.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 4.5e-12 75.9 80 52.5
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 4.5e-12 75.9 80 52.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 4.5e-12 75.9 109 45.0
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 4.5e-12 75.9 105 46.7
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 5.9e-12 75.5 105 40.0
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.9e-12 75.5 107 44.9
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 5.9e-12 75.5 76 56.6
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 5.9e-12 75.5 108 46.3
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 7.7e-12 75.1 117 43.6
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 7.7e-12 75.1 111 41.4
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 7.7e-12 75.1 69 52.2
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.0e-11 74.7 103 45.6
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.3e-11 74.3 77 53.2
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.3e-11 74.3 91 46.2
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.7e-11 73.9 103 45.6
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.9e-11 73.2 83 49.4
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.8e-11 72.8 71 54.9
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 5.0e-11 72.4 109 44.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 6.5e-11 72.0 122 39.3
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 6.5e-11 72.0 81 54.3
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 8.5e-11 71.6 103 46.6
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.1e-10 71.2 150 36.0
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.5e-10 70.9 91 45.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.5e-10 70.1 74 54.1
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 2.5e-10 70.1 76 52.6
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 4.2e-10 69.3 72 51.4
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 5.5e-10 68.9 69 50.7
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 5.5e-10 68.9 91 44.0
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.2e-10 68.6 81 46.9
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 7.2e-10 68.6 69 49.3
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 7.2e-10 68.6 101 48.5
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 7.2e-10 68.6 91 45.1
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 9.4e-10 68.2 68 55.9
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 9.4e-10 68.2 69 55.1
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.6e-09 67.4 88 45.5
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.6e-09 67.4 67 55.2
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.1e-09 67.0 69 55.1
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 2.1e-09 67.0 100 42.0
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.1e-09 67.0 91 45.1
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.1e-09 67.0 69 50.7
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 2.1e-09 67.0 94 45.7
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.1e-09 67.0 89 46.1
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 3.6e-09 66.2 69 49.3
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 3.6e-09 66.2 63 54.0
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 4.7e-09 65.9 83 45.8
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 4.7e-09 65.9 100 44.0
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 4.7e-09 65.9 76 51.3
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 6.1e-09 65.5 73 49.3
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.0e-08 64.7 84 48.8
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.0e-08 64.7 81 46.9
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.4e-08 64.3 95 46.3
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.4e-08 64.3 64 53.1
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.8e-08 63.9 80 45.0
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 2.3e-08 63.5 85 45.9
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.3e-08 63.5 94 41.5
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.0e-08 62.8 54 61.1
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 5.2e-08 62.4 78 44.9
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 5.2e-08 62.4 108 39.8
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 8.8e-08 61.6 82 46.3
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.2e-07 61.2 108 38.9
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 1.5e-07 60.8 76 40.8
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.0e-07 60.5 88 42.0
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.0e-07 60.5 74 40.5
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 4.4e-07 59.3 71 45.1
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 9.8e-07 58.2 80 43.8
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 3.7e-06 56.2 67 47.8
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 8.3e-06 55.1 50 58.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 8.3e-06 55.1 107 38.3


User provided reference genes

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