Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.4e-128 463.0 237 100.0
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 7.9e-92 340.9 245 78.0
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.5e-90 336.7 232 75.0
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 4.5e-87 325.1 243 71.6
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 9.4e-77 290.8 241 65.6
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.0e-75 287.3 238 66.8
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 2.3e-75 286.2 236 67.4
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.3e-74 282.3 192 75.5
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 2.2e-73 279.6 241 63.1
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 3.7e-73 278.9 236 63.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 4.8e-73 278.5 236 63.1
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 6.3e-73 278.1 241 62.7
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.1e-72 277.3 241 62.7
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 4.1e-72 275.4 232 65.1
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 7.0e-72 274.6 241 61.8
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 7.0e-72 274.6 230 65.2
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 9.1e-72 274.2 232 63.8
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 9.1e-72 274.2 241 61.8
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.2e-71 273.9 232 63.8
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 1.9e-69 266.5 180 74.4
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.6e-68 263.5 242 62.0
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 3.6e-68 262.3 232 62.5
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.0e-67 260.8 230 64.3
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.4e-67 260.4 236 61.9
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 2.3e-67 259.6 232 62.1
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.2e-67 258.5 232 62.9
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 5.2e-67 258.5 235 63.8
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.2e-66 257.3 238 61.8
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.0e-66 256.5 232 61.6
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.0e-66 256.5 233 60.9
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.4e-66 255.8 232 62.1
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 4.4e-66 255.4 235 62.1
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 5.7e-66 255.0 232 60.3
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 7.5e-66 254.6 182 71.4
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 7.5e-66 254.6 226 59.7
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 9.7e-66 254.2 200 65.5
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 9.7e-66 254.2 232 62.1
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.3e-65 253.8 230 62.6
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 2.8e-65 252.7 233 60.5
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 2.8e-65 252.7 230 61.7
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.7e-65 252.3 217 64.1
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 3.7e-65 252.3 233 61.4
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.1e-64 250.8 226 61.5
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 3.1e-64 249.2 232 59.9
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.1e-64 249.2 231 61.9
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.3e-64 248.4 230 62.2
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 5.3e-64 248.4 235 60.0
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 5.3e-64 248.4 230 60.9
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 7.0e-64 248.1 235 59.1
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 7.0e-64 248.1 235 59.1
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 7.0e-64 248.1 233 58.8
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.0e-63 246.5 184 69.0
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 2.7e-63 246.1 237 59.5
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 2.7e-63 246.1 233 58.8
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 2.7e-63 246.1 233 58.8
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.5e-63 245.7 249 57.4
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.5e-63 245.7 233 59.7
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 4.5e-63 245.4 238 58.8
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.5e-63 245.4 231 61.0
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.3e-62 243.8 168 73.2
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.3e-62 243.8 232 60.3
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.7e-62 243.4 230 60.4
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.7e-62 243.4 233 61.4
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 2.2e-62 243.0 232 58.2
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 2.9e-62 242.7 233 59.2
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 2.9e-62 242.7 231 61.9
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.8e-62 242.3 230 60.4
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 5.0e-62 241.9 232 59.5
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.5e-62 241.5 224 62.1
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 8.5e-62 241.1 234 59.8
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 1.1e-61 240.7 188 67.6
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 5.5e-61 238.4 232 59.9
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 7.2e-61 238.0 167 71.9
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 9.4e-61 237.7 184 66.3
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.2e-60 237.3 261 55.9
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.2e-60 237.3 235 59.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.7e-60 236.1 230 58.7
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 2.7e-60 236.1 232 59.5
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 3.6e-60 235.7 167 71.3
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 4.7e-60 235.3 233 59.7
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.1e-60 235.0 232 57.8
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 8.0e-60 234.6 234 56.4
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.4e-59 233.8 235 56.6
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.8e-59 233.4 237 58.6
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 6.8e-59 231.5 200 61.5
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.6e-58 229.6 227 58.1
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 4.4e-58 228.8 232 56.9
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 4.4e-58 228.8 232 57.3
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 5.7e-58 228.4 200 64.0
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 5.7e-58 228.4 229 57.6
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 5.7e-58 228.4 234 57.7
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 7.5e-58 228.0 230 55.7
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.7e-57 226.9 232 56.0
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 2.2e-57 226.5 227 57.3
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 2.2e-57 226.5 156 74.4
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 2.8e-57 226.1 156 74.4
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 3.7e-57 225.7 237 56.5
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 3.7e-57 225.7 179 65.4
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 6.3e-57 224.9 227 59.0
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 1.4e-56 223.8 229 56.8
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.8e-56 223.4 232 55.6
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.4e-56 223.0 167 67.7
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.1e-56 222.6 221 57.0
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 9.1e-56 221.1 228 58.3
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.2e-55 220.7 223 59.2
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 1.6e-55 220.3 227 57.3
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.6e-55 220.3 156 73.1
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.6e-55 220.3 228 54.8
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 2.0e-55 219.9 227 57.3
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.0e-55 219.9 156 73.1
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 4.5e-55 218.8 225 58.2
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 5.9e-55 218.4 156 72.4
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 5.9e-55 218.4 156 72.4
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 7.7e-55 218.0 231 55.4
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.3e-54 217.2 168 64.9
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.7e-54 216.9 144 79.9
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.3e-54 216.5 228 57.0
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.5e-53 213.8 209 56.5
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 1.9e-53 213.4 161 70.8
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.5e-53 213.0 233 55.4
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 2.5e-53 213.0 233 54.9
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 4.7e-52 208.8 194 59.8
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 8.0e-52 208.0 209 54.5
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 2.3e-51 206.5 218 54.1
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.2e-50 204.1 162 65.4
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.7e-49 200.3 215 53.5
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.2e-47 194.1 232 50.9
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.0e-47 193.4 157 64.3
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 4.5e-47 192.2 232 50.0
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.5e-45 187.2 235 49.8
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.5e-45 186.4 233 49.8
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.5e-45 186.4 233 49.8
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 9.5e-45 184.5 226 50.9
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.3e-43 179.9 205 50.7
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 3.1e-43 179.5 193 54.4
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 4.9e-41 172.2 199 52.3
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 8.3e-41 171.4 178 53.9
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 8.3e-41 171.4 128 66.4
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 1.9e-40 170.2 110 80.0
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 7.3e-37 158.3 98 79.6
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.7e-33 147.1 207 47.8
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.4e-32 144.1 154 55.8
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.2e-32 142.9 134 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 7.1e-32 141.7 144 56.2
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.2e-31 141.0 100 73.0
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 8.6e-30 134.8 103 64.1
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.5e-29 133.3 130 56.9
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.6e-29 132.1 102 67.6
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 6.6e-22 108.6 80 67.5
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.5e-21 106.7 73 75.3
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 2.6e-18 96.7 64 71.9
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-16 90.5 95 57.9
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.9e-16 90.5 95 57.9
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.6e-15 87.4 68 61.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.3e-12 77.8 94 40.4
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.8e-12 76.6 106 36.8
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 6.9e-11 72.0 106 38.7


User provided reference genes

Program Settings