Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 1.3e-98 363.2 203 100.0
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 1.9e-57 226.5 208 67.3
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 1.1e-36 157.5 213 50.7
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 5.8e-35 151.8 173 56.1
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 7.1e-33 144.8 138 60.9
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 7.9e-32 141.4 179 51.4
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 8.7e-31 137.9 70 88.6
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 8.7e-31 137.9 92 72.8
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 1.1e-30 137.5 167 50.3
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.5e-30 136.3 131 64.9
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 2.5e-30 136.3 145 57.9
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 5.7e-30 135.2 70 85.7
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 7.4e-30 134.8 198 50.5
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 2.8e-29 132.9 145 52.4
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 4.8e-29 132.1 97 66.0
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 4.8e-29 132.1 96 66.7
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 8.2e-29 131.3 98 67.3
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 8.2e-29 131.3 175 53.1
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-28 131.0 98 62.2
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.1e-28 131.0 133 57.9
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.1e-28 131.0 80 72.5
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.4e-28 130.6 76 76.3
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.8e-28 130.2 112 67.0
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 1.8e-28 130.2 128 59.4
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 2.4e-28 129.8 206 46.6
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 3.1e-28 129.4 125 56.0
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 4.1e-28 129.0 90 72.2
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 4.1e-28 129.0 202 44.6
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 6.9e-28 128.3 120 60.8
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 6.9e-28 128.3 117 59.0
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 9.0e-28 127.9 70 82.9
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.2e-27 127.5 98 65.3
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.2e-27 127.5 98 65.3
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 1.2e-27 127.5 181 42.5
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.0e-27 126.7 127 52.0
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 2.0e-27 126.7 88 69.3
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.0e-27 126.7 123 52.8
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 2.6e-27 126.3 153 54.9
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 3.4e-27 125.9 167 50.3
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 3.4e-27 125.9 194 44.8
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 3.4e-27 125.9 94 61.7
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 4.5e-27 125.6 80 70.0
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 7.6e-27 124.8 112 57.1
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.0e-26 124.4 113 63.7
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 1.0e-26 124.4 79 69.6
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 1.3e-26 124.0 100 63.0
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.3e-26 124.0 183 44.3
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.7e-26 123.6 178 46.6
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 1.7e-26 123.6 70 78.6
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 1.7e-26 123.6 152 56.6
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 1.7e-26 123.6 182 48.9
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 1.7e-26 123.6 135 46.7
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 2.9e-26 122.9 111 61.3
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 2.9e-26 122.9 151 47.0
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 3.8e-26 122.5 76 72.4
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.8e-26 122.5 145 49.0
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 3.8e-26 122.5 94 66.0
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 5.0e-26 122.1 173 44.5
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 5.0e-26 122.1 173 44.5
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 5.0e-26 122.1 172 47.1
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 5.0e-26 122.1 141 53.2
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 5.0e-26 122.1 81 67.9
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 5.0e-26 122.1 80 67.5
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 5.0e-26 122.1 96 63.5
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 6.5e-26 121.7 194 45.9
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 6.5e-26 121.7 125 51.2
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 6.5e-26 121.7 90 64.4
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 1.1e-25 120.9 80 71.2
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.1e-25 120.9 130 56.9
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.1e-25 120.9 79 68.4
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 1.1e-25 120.9 109 55.0
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 1.4e-25 120.6 148 48.6
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 1.9e-25 120.2 166 45.8
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.9e-25 120.2 96 61.5
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.9e-25 120.2 183 49.2
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.9e-25 120.2 177 46.9
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 3.2e-25 119.4 115 58.3
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 4.2e-25 119.0 187 44.9
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 5.5e-25 118.6 180 50.6
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 5.5e-25 118.6 91 62.6
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 5.5e-25 118.6 113 52.2
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 7.2e-25 118.2 95 65.3
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 9.3e-25 117.9 151 53.6
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.2e-24 117.5 161 43.5
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 1.2e-24 117.5 142 49.3
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 1.6e-24 117.1 150 50.0
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.6e-24 117.1 76 69.7
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 1.6e-24 117.1 89 61.8
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.7e-24 116.3 140 44.3
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.5e-24 115.9 73 68.5
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.5e-24 115.9 174 44.8
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 3.5e-24 115.9 129 55.0
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 3.5e-24 115.9 137 49.6
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 4.6e-24 115.5 100 57.0
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 4.6e-24 115.5 151 50.3
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 4.6e-24 115.5 162 47.5
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 4.6e-24 115.5 117 50.4
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 4.6e-24 115.5 172 44.8
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 6.1e-24 115.2 163 47.2
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 6.1e-24 115.2 67 73.1
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 6.1e-24 115.2 73 69.9
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 7.9e-24 114.8 116 53.4
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 7.9e-24 114.8 78 67.9
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.0e-23 114.4 91 64.8
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 1.8e-23 113.6 90 61.1
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 3.0e-23 112.8 144 50.0
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 5.1e-23 112.1 93 61.3
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 5.1e-23 112.1 179 43.6
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 6.7e-23 111.7 85 63.5
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 8.7e-23 111.3 95 58.9
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 8.7e-23 111.3 189 41.3
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 1.1e-22 110.9 67 73.1
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.1e-22 110.9 86 60.5
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.5e-22 110.5 163 41.1
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.5e-22 110.5 102 55.9
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 1.9e-22 110.2 95 57.9
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.9e-22 110.2 80 66.2
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.5e-22 109.8 148 50.7
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 5.7e-22 108.6 169 47.3
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 7.4e-22 108.2 81 60.5
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.3e-21 107.5 152 48.0
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.3e-21 107.5 71 73.2
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.3e-21 107.5 71 73.2
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.3e-21 107.5 71 73.2
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.3e-21 107.5 71 73.2
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 1.6e-21 107.1 125 54.4
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.8e-21 106.3 105 51.4
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 3.7e-21 105.9 98 53.1
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 3.7e-21 105.9 98 53.1
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 3.7e-21 105.9 98 53.1
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 3.7e-21 105.9 72 66.7
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 6.3e-21 105.1 136 45.6
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-20 104.4 98 55.1
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 1.4e-20 104.0 92 55.4
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.4e-20 104.0 108 52.8
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 4.1e-20 102.4 90 53.3
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 9.0e-20 101.3 139 44.6
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 9.0e-20 101.3 139 44.6
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.2e-19 100.9 98 53.1
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 1.5e-19 100.5 90 55.6
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 1.5e-19 100.5 71 60.6
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 3.4e-19 99.4 123 45.5
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 4.5e-19 99.0 88 59.1
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 1.3e-18 97.4 162 40.1
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 5.0e-18 95.5 186 41.4
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.1e-17 94.4 104 52.9
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 1.4e-17 94.0 68 63.2
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 2.5e-17 93.2 189 39.2
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 2.5e-17 93.2 189 39.2
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 2.5e-17 93.2 120 51.7
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.2e-16 90.9 189 40.2
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 3.6e-16 89.4 72 54.2
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 1.4e-15 87.4 162 38.3
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 1.4e-15 87.4 142 41.5
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 2.3e-15 86.7 68 55.9
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 3.9e-15 85.9 133 39.1
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 7.4e-14 81.6 99 43.4
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 6.3e-13 78.6 139 40.3
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 1.4e-12 77.4 94 41.5
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.4e-12 77.4 94 41.5
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.4e-12 77.4 94 41.5
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.2e-11 74.3 68 48.5
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.5e-11 73.9 69 53.6
SMO353G0120 Selaginella moellendorffii HOM05D003879 ORTHO05D003858 3.4e-11 72.8 77 48.1
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 1.3e-10 70.9 67 52.2
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.7e-10 70.5 77 44.2
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 6.5e-10 68.6 81 45.7
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 6.5e-10 68.6 62 56.5
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.1e-09 67.8 75 48.0
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 4.2e-09 65.9 62 51.6
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 5.5e-09 65.5 124 36.3
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 5.5e-09 65.5 69 47.8
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 7.2e-09 65.1 61 49.2
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 2.3e-07 60.1 73 45.2
Carub.0008s1815 Capsella rubella HOM05D003879 ORTHO05D003858 3.9e-07 59.3 103 34.0
RcHm_v2.0_Chr7g0217291 Rosa chinensis HOM05D003879 ORTHO05D003858 3.9e-07 59.3 125 40.8
BcaB08g36120 Brassica carinata HOM05D015339 ORTHO05D003858 6.7e-07 58.5 98 33.7
A09p52500 Brassica napus HOM05D003879 ORTHO05D003858 6.7e-07 58.5 74 44.6
Lj5g0017481 Lotus japonicus HOM05D003879 ORTHO05D003858 1.1e-06 57.8 52 53.8
BcaC04g19944 Brassica carinata HOM05D015339 ORTHO05D003858 1.5e-06 57.4 99 34.3
BolC9t57805H Brassica oleracea HOM05D015339 ORTHO05D003858 1.5e-06 57.4 99 34.3
AL1G30600 Arabidopsis lyrata HOM05D013370 ORTHO05D016580 2.0e-06 57.0 72 41.7
C09p49520 Brassica napus HOM05D015339 ORTHO05D003858 2.6e-06 56.6 99 34.3
Cre14.g619950 Chlamydomonas reinhardtii HOM05D003879 ORTHO05D003858 2.6e-06 56.6 118 37.3
AL1G36940 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 4.4e-06 55.8 67 44.8
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 5.7e-06 55.5 119 34.5


User provided reference genes

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