Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 2343.5 1210 100.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1809.3 1209 77.1
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1789.6 1208 76.1
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1784.2 1206 76.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1669.8 1219 70.3
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1634.0 1217 68.0
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1634.0 1220 69.1
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1630.2 1219 68.5
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1624.8 1218 68.3
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1615.5 1213 68.1
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1609.0 1222 67.8
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1602.8 1217 67.7
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1600.5 1217 67.6
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1597.0 1215 67.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1589.7 1214 66.6
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1589.3 1194 68.3
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1588.9 1217 67.5
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1587.8 1208 67.6
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1582.0 1217 66.5
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1579.7 1212 66.3
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1574.7 1222 66.2
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1573.1 1213 66.5
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1572.8 1212 66.8
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1570.8 1222 66.5
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1567.0 1220 66.7
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1566.6 1219 65.9
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1563.5 1266 64.8
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1560.4 1208 66.6
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1557.7 1210 65.6
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1557.3 1212 65.6
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1556.6 1208 66.5
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1555.8 1215 66.5
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1553.9 1208 66.2
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1553.1 1208 66.2
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1552.0 1211 65.7
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1551.6 1208 66.2
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1550.8 1181 67.0
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1543.1 1204 66.0
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1539.2 1221 65.1
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1538.1 1214 64.7
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1537.7 1218 65.4
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1534.6 1217 64.4
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1527.7 1221 65.1
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1525.8 1221 64.9
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1520.0 1218 63.7
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1516.1 1219 64.1
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1511.9 1212 64.1
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1509.2 1216 64.1
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1508.0 1227 63.7
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1506.5 1219 64.3
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1506.1 1216 63.6
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1506.1 1223 63.6
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1499.6 1214 64.5
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1499.2 1194 65.3
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1498.4 1216 62.7
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1495.7 1218 62.5
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1492.6 1218 62.7
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1488.8 1213 64.1
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1482.6 1174 64.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1478.4 1220 62.9
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1475.3 1217 61.5
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1474.9 1219 62.8
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1471.8 1216 63.2
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1469.5 1209 62.6
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1469.1 1217 62.0
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1467.2 1212 62.0
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1466.4 1217 62.0
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1466.1 1218 62.2
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1463.7 1218 62.2
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1461.4 1214 63.3
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1460.7 1214 62.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1459.1 1213 62.9
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1458.7 1214 62.4
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1458.0 1222 61.9
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1457.2 1212 62.7
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1450.6 1213 62.1
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1446.0 1219 62.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1442.9 1216 62.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1442.9 1217 62.0
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1442.6 1179 63.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1434.9 1227 63.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1433.7 1203 61.4
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1424.5 1213 61.1
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1422.9 1192 62.7
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1408.7 1125 63.7
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1403.3 1193 61.4
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1401.3 1203 60.5
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1382.9 1205 60.3
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1378.6 980 71.4
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1374.0 1212 59.5
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1371.3 1220 60.6
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1343.2 1148 60.4
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1334.7 1302 56.8
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1326.2 1217 57.8
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1297.3 1210 56.9
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1286.2 1217 55.2
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1281.5 1023 63.7
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1271.5 1215 57.1
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1264.6 1151 58.3
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1253.8 1189 55.6
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1120.1 1051 56.8
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1104.4 807 69.8
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1080.5 889 62.3
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 1.0e-307 1060.4 960 58.5
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.5e-282 976.9 1162 49.3
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 2.2e-278 963.0 848 59.8
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.0e-263 913.3 1255 42.4
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 7.5e-263 911.4 1249 42.2
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.8e-261 906.7 1262 42.9
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 8.6e-243 844.7 1192 43.1
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.2e-241 840.9 634 68.0
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 4.1e-237 825.9 1220 40.3
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 7.3e-234 815.1 1181 42.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 4.0e-232 809.3 1167 42.0
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.7e-230 803.9 1167 41.9
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.6e-212 744.2 795 50.8
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 7.6e-207 725.3 1235 36.4
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 3.4e-199 699.9 600 61.8
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.0e-191 674.1 1023 42.3
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.4e-189 667.9 640 54.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.2e-171 606.3 583 54.9
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.6e-159 568.2 552 54.2
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 8.3e-153 545.8 492 61.4
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.9e-145 520.8 486 55.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.3e-142 511.1 430 62.3
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 9.2e-120 436.0 333 67.3
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.3e-108 399.1 309 67.6
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 4.3e-93 347.4 1407 26.2
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.8e-75 288.9 222 66.2
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.6e-71 274.2 279 50.9
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 3.4e-66 258.1 210 62.4
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 9.4e-64 250.0 186 68.8
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.3e-53 214.9 524 31.3
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 4.0e-46 191.4 235 47.2
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.6e-42 179.5 109 79.8
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.2e-40 171.8 522 28.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.1e-39 169.1 1157 21.1
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.1e-22 112.1 96 62.5
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 3.9e-17 95.1 84 60.7
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 5.2e-14 84.7 243 28.0
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-13 83.2 79 54.4
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 5.8e-13 81.3 82 53.7
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 5.8e-13 81.3 82 52.4
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 8.3e-12 77.4 63 63.5
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 7.1e-11 74.3 72 51.4
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 9.2e-11 73.9 78 50.0
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 2.3e-09 69.3 78 51.3
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.1e-09 68.2 69 53.6
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 5.6e-08 64.7 49 71.4
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 5.6e-08 64.7 49 71.4
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.8e-07 62.4 182 27.5
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.8e-06 59.7 65 52.3
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 5.2e-06 58.2 65 50.8
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 6.8e-06 57.8 88 42.0


User provided reference genes

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