Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 5.3e-224 780.8 422 100.0
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 5.2e-171 604.7 373 90.1
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 5.3e-155 551.6 383 79.4
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 6.9e-155 551.2 377 80.4
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.9e-153 545.8 345 84.3
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 5.1e-150 535.0 346 84.1
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 6.4e-145 518.1 369 77.8
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.9e-144 516.5 325 83.1
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.6e-143 513.5 377 75.1
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.1e-143 513.1 348 80.2
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.1e-142 508.4 336 81.2
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.3e-141 505.8 368 75.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 9.6e-141 504.2 365 75.1
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.3e-140 503.8 370 75.7
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.6e-140 503.4 361 76.7
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.1e-140 503.1 365 74.8
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 3.1e-139 499.2 383 74.7
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 4.0e-139 498.8 342 76.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.5e-138 496.9 371 74.4
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 2.0e-138 496.5 366 73.5
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.6e-138 496.1 364 76.9
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.0e-137 494.2 326 80.4
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 2.2e-137 493.0 362 74.3
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.9e-137 492.7 366 74.9
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 6.5e-137 491.5 371 74.1
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 3.2e-136 489.2 371 73.3
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 7.1e-136 488.0 368 73.4
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 9.3e-136 487.6 344 76.7
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.6e-135 486.9 379 73.1
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.6e-135 486.9 324 79.6
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.7e-135 486.1 369 71.3
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 3.5e-135 485.7 325 78.2
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 4.6e-135 485.3 355 73.5
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 4.6e-135 485.3 351 75.8
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 4.6e-135 485.3 372 73.1
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 6.0e-135 485.0 420 67.1
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.3e-134 483.8 371 73.0
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.8e-134 483.4 359 73.0
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 3.0e-134 482.6 327 77.1
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 3.0e-134 482.6 350 75.7
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.9e-133 479.9 326 77.6
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 7.4e-133 478.0 352 74.4
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 7.4e-133 478.0 363 67.5
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 7.4e-133 478.0 372 71.8
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.3e-132 477.2 339 75.8
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-132 476.1 338 76.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 4.8e-132 475.3 373 71.3
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 8.2e-132 474.6 339 75.5
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 8.2e-132 474.6 370 73.0
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.1e-131 474.2 339 75.5
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.4e-131 473.8 361 73.4
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.8e-131 473.4 363 71.1
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-131 471.9 323 76.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 5.3e-131 471.9 363 70.8
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 5.3e-131 471.9 352 73.9
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 5.3e-131 471.9 372 71.2
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 6.9e-131 471.5 325 77.8
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 9.0e-131 471.1 348 74.4
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-130 470.3 359 70.8
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.0e-130 469.9 355 72.4
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 2.6e-130 469.5 368 70.1
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 2.6e-130 469.5 368 70.1
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.6e-130 469.5 347 74.1
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 3.4e-130 469.2 355 72.1
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 3.4e-130 469.2 359 71.3
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.4e-130 469.2 351 73.5
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 4.5e-130 468.8 323 76.8
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 4.5e-130 468.8 355 72.1
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 5.9e-130 468.4 355 71.8
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 5.9e-130 468.4 355 71.8
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 5.9e-130 468.4 331 75.2
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 7.6e-130 468.0 355 71.8
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 7.6e-130 468.0 355 71.8
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 7.6e-130 468.0 371 70.9
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.7e-129 466.8 323 76.2
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.7e-129 466.8 346 74.3
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.7e-129 466.8 361 71.2
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.7e-129 466.8 329 75.1
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-129 466.5 355 71.5
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 3.8e-129 465.7 355 71.8
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.8e-129 465.7 355 71.3
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 5.0e-129 465.3 355 71.3
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 5.0e-129 465.3 361 70.6
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 8.5e-129 464.5 336 74.7
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 8.5e-129 464.5 347 72.3
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 1.4e-128 463.8 324 74.7
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.9e-128 463.4 328 74.7
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 3.2e-128 462.6 355 71.0
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.2e-128 462.6 347 71.2
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 5.5e-128 461.8 356 73.0
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 7.2e-128 461.5 367 71.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 4.6e-127 458.8 361 70.1
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 4.6e-127 458.8 334 76.0
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.1e-127 458.4 337 73.3
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 7.9e-127 458.0 364 70.1
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.0e-126 457.6 321 77.3
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.0e-126 457.6 344 73.3
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.8e-126 456.8 337 74.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.3e-126 456.4 357 70.3
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 5.1e-126 455.3 346 70.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.1e-125 454.1 357 70.0
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.9e-125 453.4 326 73.6
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.5e-125 453.0 339 72.9
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 3.3e-125 452.6 343 70.6
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 3.3e-125 452.6 317 76.7
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 8.2e-124 448.0 340 70.9
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.1e-123 447.6 359 71.6
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 3.1e-123 446.0 360 70.0
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 4.7e-119 432.2 302 75.5
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.4e-118 430.6 302 75.2
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.8e-118 430.3 302 75.2
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.3e-117 426.0 359 66.6
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.3e-116 424.1 380 64.7
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 3.4e-114 416.0 351 65.5
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 7.7e-114 414.8 338 67.2
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.8e-110 403.7 317 66.2
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 3.7e-108 396.0 356 66.6
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-107 393.3 314 69.7
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 5.2e-102 375.6 323 65.0
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 9.7e-101 371.3 332 62.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 6.3e-100 368.6 355 58.9
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 5.3e-99 365.5 357 60.8
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.6e-98 364.0 245 80.0
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-97 361.3 283 70.0
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.0e-94 349.7 345 58.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 8.3e-92 341.7 377 54.4
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 1.1e-91 341.3 243 76.5
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.5e-88 330.9 204 77.9
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.5e-88 330.9 271 66.8
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.2e-87 327.8 318 58.2
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.1e-87 327.0 297 58.6
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.7e-84 316.2 321 57.9
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.3e-84 315.5 358 55.0
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.9e-75 287.3 338 53.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.8e-74 282.0 231 63.2
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.0e-65 255.0 209 67.5
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.6e-55 219.9 233 54.5
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 6.4e-52 209.1 129 82.9
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.3e-44 184.9 169 58.0
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 4.8e-39 166.4 136 66.2
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 2.6e-37 160.6 164 56.1
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.9e-35 154.5 90 83.3
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 3.5e-34 150.2 101 73.3
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.2e-29 135.2 282 35.1
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.5e-29 134.8 95 70.5
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 7.1e-27 125.9 128 54.7
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 5.1e-25 119.8 78 74.4
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.9e-24 117.9 91 63.7
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.1e-22 110.5 102 52.9
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 3.8e-20 103.6 115 49.6
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.9e-19 101.3 91 54.9
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-18 98.6 65 76.9
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.3e-17 94.4 115 47.8
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 5.1e-17 93.2 77 61.0
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 5.3e-14 83.2 318 30.2
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 5.3e-14 83.2 186 36.0
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.3e-12 78.6 163 38.0
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 5.0e-12 76.6 59 64.4
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.2e-10 72.0 63 63.5
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.8e-09 68.2 52 57.7
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.1e-09 66.6 43 69.8
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.7e-09 66.2 45 64.4
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-08 65.5 45 66.7
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.3e-08 63.9 76 50.0
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.3e-08 63.9 76 50.0
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 7.4e-08 62.8 67 55.2
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 9.7e-08 62.4 61 54.1
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.7e-08 62.4 70 45.7
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.3e-07 62.0 67 74.6
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-07 62.0 45 64.4
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.7e-07 61.6 66 53.0
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 3.7e-07 60.5 70 50.0
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.3e-06 56.6 45 57.8


User provided reference genes

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