Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 0.0e+00 1288.1 644 100.0
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 3.5e-219 765.4 644 63.0
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 6.7e-210 734.6 645 60.5
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.9e-204 716.5 645 58.3
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 2.8e-200 702.6 644 57.0
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 1.9e-196 689.9 645 56.3
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 5.7e-193 678.3 645 55.0
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.7e-192 676.8 675 55.0
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.1e-191 674.1 645 55.7
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.4e-191 673.7 648 54.9
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 5.3e-191 671.8 645 54.9
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 5.3e-191 671.8 647 55.2
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 2.0e-190 669.8 645 54.9
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 6.5e-189 664.8 648 54.6
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.9e-188 663.3 645 54.1
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 2.5e-188 662.9 645 55.5
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 4.2e-188 662.1 648 54.6
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 5.5e-188 661.8 645 54.9
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.2e-187 660.6 646 54.3
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 3.6e-187 659.1 656 54.3
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 4.7e-187 658.7 644 54.0
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 1.0e-186 657.5 645 54.0
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 5.2e-186 655.2 645 54.1
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 5.2e-186 655.2 645 53.6
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 6.7e-186 654.8 647 54.1
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 3.3e-185 652.5 646 53.7
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.8e-183 646.7 645 52.7
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 2.4e-183 646.4 646 54.8
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.3e-183 645.2 646 52.6
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.3e-183 645.2 646 52.5
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 9.1e-183 644.4 645 52.4
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 9.1e-183 644.4 644 53.7
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 2.0e-182 643.3 646 52.5
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 5.9e-182 641.7 645 53.3
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.7e-182 641.3 674 52.2
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 2.9e-181 639.4 645 52.4
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 3.8e-181 639.0 646 52.0
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.5e-181 637.9 646 52.0
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 9.4e-180 634.4 646 52.8
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.6e-179 633.6 646 52.8
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.6e-179 633.6 645 52.9
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 4.7e-179 632.1 644 52.5
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 6.1e-179 631.7 645 52.7
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 3.0e-178 629.4 645 51.9
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 4.0e-178 629.0 645 51.8
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 1.2e-177 627.5 645 51.5
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 7.5e-177 624.8 645 51.5
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 7.5e-177 624.8 646 51.9
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 9.7e-177 624.4 645 51.6
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 4.8e-176 622.1 647 50.7
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 3.1e-175 619.4 645 49.5
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 7.0e-175 618.2 646 52.5
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 1.6e-174 617.1 645 51.5
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 5.9e-174 615.1 640 51.7
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 1.0e-173 614.4 648 50.9
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-173 613.2 645 51.5
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.1e-172 610.9 646 50.8
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.5e-172 609.8 645 48.8
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 1.2e-171 607.4 646 51.2
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.1e-171 606.7 645 50.5
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 4.7e-171 605.5 645 50.7
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 6.1e-171 605.1 645 50.9
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 5.2e-170 602.1 645 50.5
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 6.8e-170 601.7 645 48.8
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 2.0e-169 600.1 645 51.2
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 3.4e-169 599.4 645 50.2
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 9.8e-169 597.8 645 50.4
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 6.3e-168 595.1 645 50.2
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.4e-167 594.0 645 49.8
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 3.1e-167 592.8 646 50.9
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 4.1e-167 592.4 646 49.7
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 9.1e-167 591.3 645 49.6
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.2e-166 590.9 548 57.7
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.9e-164 583.6 489 61.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.9e-164 583.6 482 62.2
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 3.3e-164 582.8 489 62.0
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 4.2e-164 582.4 645 50.5
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 1.0e-162 577.8 645 49.1
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 4.4e-161 572.4 582 52.9
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.9e-156 557.0 646 46.7
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 4.7e-155 552.4 456 61.8
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 6.1e-155 552.0 563 53.3
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.4e-154 550.8 647 47.4
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.4e-154 550.8 647 47.4
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 5.8e-153 545.4 549 53.7
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 1.7e-152 543.9 582 50.5
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.6e-150 537.3 732 41.8
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 1.0e-149 534.6 647 46.5
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 1.0e-149 534.6 647 46.8
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 1.0e-149 534.6 647 46.8
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 1.7e-149 533.9 396 67.7
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 3.9e-149 532.7 646 45.2
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.1e-148 531.2 580 50.5
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.4e-146 524.2 644 44.9
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.2e-131 474.6 496 52.2
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.3e-125 453.8 584 41.6
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.6e-123 447.6 647 41.0
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 2.1e-123 447.2 500 49.4
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 5.8e-121 439.1 491 49.3
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 3.8e-120 436.4 465 49.0
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.4e-119 433.7 466 50.9
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 9.0e-114 415.2 370 57.0
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 8.4e-112 408.7 545 46.1
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 5.6e-108 396.0 668 35.9
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 7.9e-102 375.6 423 48.2
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 7.6e-97 359.0 648 35.3
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 4.1e-90 336.7 657 33.5
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 1.9e-87 327.8 364 48.6
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.4e-79 301.6 511 38.6
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 3.2e-71 273.9 250 61.2
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.3e-56 225.3 543 31.1
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 5.5e-55 219.9 307 43.6
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 1.6e-54 218.4 209 54.1
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.6e-49 201.8 165 61.2
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 4.1e-42 177.2 161 58.4
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 2.2e-35 154.8 153 49.0
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.1e-31 142.5 759 23.3
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 1.5e-31 142.1 152 51.3
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 3.1e-29 134.4 437 29.3
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 8.9e-29 132.9 119 52.9
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 3.5e-25 120.9 113 52.2
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 8.6e-24 116.3 126 51.6
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.5e-20 105.5 116 47.4
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.5e-20 105.5 116 47.4
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 3.4e-20 104.4 658 21.6
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.7e-19 102.1 87 58.6
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-19 101.7 112 44.6
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 9.2e-18 96.3 94 55.3
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.3e-16 92.4 73 61.6
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 1.7e-16 92.0 54 74.1
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 3.6e-14 84.3 82 54.9
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 7.6e-12 76.6 145 33.8
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 5.4e-10 70.5 52 59.6
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.7e-08 65.5 44 59.1
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 2.3e-08 65.1 70 48.6
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 5.1e-08 63.9 107 36.4
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 4.3e-07 60.8 68 48.5


User provided reference genes

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