Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 2.2e-58 228.8 120 100.0
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 1.8e-55 219.2 120 95.0
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 8.2e-53 210.3 120 91.7
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 6.9e-52 207.2 120 90.8
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.5e-51 206.1 114 93.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 3.4e-51 204.9 120 88.3
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 3.4e-51 204.9 120 88.3
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.5e-51 204.5 114 92.1
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 7.7e-51 203.8 120 89.2
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.7e-51 203.8 120 88.3
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 117 88.0
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 114 89.5
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 2.2e-50 202.2 114 89.5
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 114 89.5
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.9e-50 201.8 114 91.2
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.9e-50 201.8 114 89.5
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.9e-50 201.8 113 91.2
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.9e-50 201.8 113 89.4
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 3.8e-50 201.4 120 87.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 5.0e-50 201.1 122 86.1
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 5.0e-50 201.1 122 86.1
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 5.0e-50 201.1 120 88.3
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 6.5e-50 200.7 114 91.2
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 6.5e-50 200.7 114 88.6
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 6.5e-50 200.7 112 89.3
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 8.5e-50 200.3 120 88.3
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 8.5e-50 200.3 120 88.3
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 8.5e-50 200.3 122 86.9
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.1e-49 199.9 120 90.8
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 1.4e-49 199.5 117 88.0
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.4e-49 199.5 120 83.3
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.4e-49 199.5 114 88.6
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.4e-49 199.5 114 88.6
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.9e-49 199.1 114 88.6
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.9e-49 199.1 113 90.3
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.9e-49 199.1 114 89.5
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.9e-49 199.1 113 90.3
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 2.5e-49 198.7 115 88.7
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 2.5e-49 198.7 120 88.3
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.5e-49 198.7 113 91.2
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.2e-49 198.4 113 88.5
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.2e-49 198.4 113 89.4
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 4.2e-49 198.0 113 90.3
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 4.2e-49 198.0 120 87.5
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 4.2e-49 198.0 120 87.5
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 4.2e-49 198.0 121 87.6
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 5.5e-49 197.6 113 88.5
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 5.5e-49 197.6 120 86.7
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.5e-49 197.6 114 86.0
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.5e-49 197.6 113 90.3
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 7.2e-49 197.2 113 87.6
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 7.2e-49 197.2 120 86.7
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 7.2e-49 197.2 120 86.7
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 7.2e-49 197.2 120 85.0
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 9.4e-49 196.8 113 88.5
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 9.4e-49 196.8 113 89.4
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 9.4e-49 196.8 113 88.5
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 9.4e-49 196.8 113 88.5
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 9.4e-49 196.8 113 86.7
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-48 196.4 120 86.7
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.2e-48 196.4 120 84.2
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 1.2e-48 196.4 120 87.5
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 88.5
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 87.7
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 87.7
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 90.4
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.1e-48 195.7 114 86.8
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 87.6
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 87.6
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.1e-48 195.7 120 84.2
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 87.6
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 88.5
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 88.5
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 87.6
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 89.4
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 88.5
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.7e-48 195.3 120 85.8
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 3.6e-48 194.9 113 87.6
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 3.6e-48 194.9 113 87.6
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.6e-48 194.9 115 87.8
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.6e-48 194.9 115 87.8
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 3.6e-48 194.9 115 87.8
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 3.6e-48 194.9 113 87.6
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 3.6e-48 194.9 114 86.8
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 87.6
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 87.6
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 7.9e-48 193.7 113 86.7
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 7.9e-48 193.7 113 86.7
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 7.9e-48 193.7 113 87.6
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 7.9e-48 193.7 113 86.7
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 7.9e-48 193.7 113 86.7
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 1.0e-47 193.4 120 84.2
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.4e-47 193.0 113 86.7
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.8e-47 192.6 114 84.2
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 2.3e-47 192.2 111 88.3
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 3.0e-47 191.8 113 86.7
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 3.9e-47 191.4 113 84.1
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 3.9e-47 191.4 113 85.8
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 5.1e-47 191.0 110 87.3
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.7e-47 190.7 117 82.9
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.8e-47 190.3 117 82.9
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.8e-47 190.3 117 82.9
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 8.8e-47 190.3 120 83.3
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.1e-46 189.9 120 82.5
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.1e-46 189.9 117 83.8
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.0e-46 189.1 113 86.7
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 2.5e-46 188.7 113 85.8
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.3e-46 188.3 116 82.8
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 3.3e-46 188.3 113 85.0
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 5.7e-46 187.6 112 88.4
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 7.4e-46 187.2 109 88.1
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 7.4e-46 187.2 118 78.8
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 7.4e-46 187.2 113 85.8
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.3e-45 186.4 113 81.4
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 1.7e-45 186.0 110 85.5
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 2.2e-45 185.7 116 81.0
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 8.2e-45 183.7 110 83.6
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.1e-44 183.3 105 88.6
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 1.4e-44 183.0 109 86.2
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 6.9e-44 180.6 113 81.4
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 6.9e-44 180.6 130 76.9
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 6.9e-44 180.6 109 81.7
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 9.1e-44 180.3 109 83.5
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 2.0e-43 179.1 113 77.9
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 2.6e-43 178.7 113 80.5
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 3.4e-43 178.3 112 78.6
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 3.4e-43 178.3 114 74.6
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 1.7e-42 176.0 149 66.4
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.4e-39 166.4 180 57.2
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 2.0e-38 162.5 107 74.8
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 9.7e-38 160.2 89 87.6
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.7e-37 159.5 88 93.2
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.2e-37 159.1 124 74.2
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 4.8e-37 157.9 197 50.3
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.9e-33 146.0 85 87.1
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 9.4e-33 143.7 85 85.9
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.6e-32 142.9 72 95.8
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 3.6e-32 141.7 81 87.7
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 8.0e-32 140.6 86 82.6
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.8e-31 139.4 99 75.8
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 3.9e-31 138.3 73 93.2
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 3.9e-31 138.3 86 80.2
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 7.4e-30 134.0 92 77.2
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.7e-29 132.9 105 69.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.7e-29 132.9 105 69.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 4.8e-29 131.3 67 95.5
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.1e-28 130.2 82 80.5
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 2.2e-26 122.5 109 57.8
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 2.5e-25 119.0 97 56.7
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 4.2e-25 118.2 80 77.5
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.7e-24 115.5 70 85.7
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 4.7e-24 114.8 70 85.7
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 5.7e-22 107.8 83 68.7
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.7e-22 107.1 74 74.3
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.8e-20 102.8 72 66.7
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 5.9e-19 97.8 107 58.9
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.0e-15 87.0 47 91.5
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 2.3e-10 69.3 48 75.0
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 4.2e-09 65.1 43 76.7
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-08 63.5 41 78.0
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-08 63.5 41 78.0
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 8.0e-08 60.8 62 59.7
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 2.6e-06 55.8 45 66.7
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 3.4e-06 55.5 45 62.2


User provided reference genes

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