Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14280 Striga asiatica HOM05D005799 ORTHO05D007150 3.1e-64 248.4 139 100.0
SGA_v2.0_scaffold104G30268 Striga asiatica HOM05D005799 ORTHO05D007150 1.4e-24 116.7 77 80.5
MSTRG.12196 Avicennia marina HOM05D005799 ORTHO05D007150 2.8e-20 102.4 77 71.4
SalBow6G6472 Salvia bowleyana HOM05D005799 ORTHO05D007150 4.9e-17 91.7 108 59.3
Migut.I01141 Erythranthe guttata HOM05D005799 ORTHO05D007150 8.4e-17 90.9 102 54.9
Oeu010742.3 Olea europaea HOM05D005799 ORTHO05D007150 7.1e-16 87.8 82 58.5
Rhsim02G0251100 Rhododendron simsii HOM05D005799 ORTHO05D007150 1.7e-14 83.2 104 51.9
RhsimUnG0077100 Rhododendron simsii HOM05D005799 ORTHO05D007150 1.7e-14 83.2 104 51.9
CSS0005333 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 3.9e-14 82.0 93 53.8
CSS0012502 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 3.9e-14 82.0 93 53.8
Solyc08g066730.3 Solanum lycopersicum HOM05D005799 ORTHO05D007150 6.6e-14 81.3 79 59.5
Sopen08g020700 Solanum pennellii HOM05D005799 ORTHO05D007150 6.6e-14 81.3 79 58.2
Actinidia22199 Actinidia chinensis HOM05D005799 ORTHO05D007150 8.7e-14 80.9 53 75.5
AUR62019903 Chenopodium quinoa HOM05D005799 ORTHO05D007150 1.1e-13 80.5 90 55.6
vmacro11512 Vaccinium macrocarpon HOM05D005799 ORTHO05D007150 1.1e-13 80.5 107 50.5
unitig_748.g7543 Utricularia gibba HOM05D005799 ORTHO05D007150 1.5e-13 80.1 77 58.4
AUR62007039 Chenopodium quinoa HOM05D005799 ORTHO05D007150 1.9e-13 79.7 90 55.6
Cc08_g16640 Coffea canephora HOM05D005799 ORTHO05D007150 1.9e-13 79.7 83 56.6
Dinv12007 Davidia involucrata HOM05D005799 ORTHO05D007150 9.6e-13 77.4 77 57.1
PGSC0003DMG400004314 Solanum tuberosum HOM05D005799 ORTHO05D007150 9.6e-13 77.4 79 57.0
Nitab4.5_0000151g0390 Nicotiana tabacum HOM05D005799 ORTHO05D007150 1.3e-12 77.0 97 49.5
Nitab4.5_0000837g0110 Nicotiana tabacum HOM05D005799 ORTHO05D007150 2.1e-12 76.3 53 71.7
Peaxi162Scf00161g00018 Petunia axillaris HOM05D005799 ORTHO05D007150 2.1e-12 76.3 77 59.7
Sc07g0010180 Simmondsia chinensis HOM05D005799 ORTHO05D007150 6.2e-12 74.7 96 51.0
arahy.Tifrunner.gnm1.ann1.YTN4Z3 Arachis hypogaea HOM05D005799 ORTHO05D007150 3.1e-11 72.4 61 54.1
Lalb_Chr10g0096751 Lupinus albus HOM05D005799 ORTHO05D007150 4.0e-11 72.0 69 47.8
Sed0014517 Sechium edule HOM05D005799 ORTHO05D007150 6.9e-11 71.2 74 51.4
arahy.Tifrunner.gnm1.ann1.3PG13R Arachis hypogaea HOM05D005799 ORTHO05D007150 1.2e-10 70.5 61 52.5
EL10Ac5g12455 Beta vulgaris HOM05D005799 ORTHO05D007150 2.6e-10 69.3 105 45.7
CAN.G335.7 Capsicum annuum HOM05D005799 ORTHO05D007150 2.6e-10 69.3 63 57.1
Medtr8g104280 Medicago truncatula HOM05D005799 ORTHO05D007150 4.4e-10 68.6 59 50.8
DCAR_006533 Daucus carota HOM05D005799 ORTHO05D007150 5.8e-10 68.2 64 51.6
Duzib205G1547 Durio zibethinus HOM05D005799 ORTHO05D007150 5.8e-10 68.2 107 40.2
Manes.02G004000 Manihot esculenta HOM05D005799 ORTHO05D007150 5.8e-10 68.2 75 49.3
Potri.001G085200 Populus trichocarpa HOM05D005799 ORTHO05D007150 7.6e-10 67.8 60 60.0
CARHR255850 Cardamine hirsuta HOM05D005799 ORTHO05D007150 1.3e-09 67.0 66 51.5
Gorai.008G257500 Gossypium raimondii HOM05D005799 ORTHO05D007150 1.3e-09 67.0 94 43.6
Lj3g0012917 Lotus japonicus HOM05D005799 ORTHO05D007150 1.3e-09 67.0 61 47.5
Psat7g010960 Pisum sativum HOM05D005799 ORTHO05D007150 1.3e-09 67.0 52 55.8
Glyma.16G033100 Glycine max HOM05D005799 ORTHO05D007150 1.7e-09 66.6 61 47.5
MELO3C013781.2 Cucumis melo HOM05D005799 ORTHO05D007150 2.9e-09 65.9 67 50.7
QL02p029127 Quercus lobata HOM05D005799 ORTHO05D007150 2.9e-09 65.9 69 52.2
TAR375G0991 Trochodendron aralioides HOM05D005799 ORTHO05D007150 2.9e-09 65.9 75 53.3
CsaV3_3G000940 Cucumis sativus L. HOM05D005799 ORTHO05D007150 3.8e-09 65.5 67 50.7
Eucgr.D01689 Eucalyptus grandis HOM05D005799 ORTHO05D007150 3.8e-09 65.5 105 41.0
Gohir.D12G240500 Gossypium hirsutum HOM05D005799 ORTHO05D007150 3.8e-09 65.5 94 42.6
Lalb_Chr04g0259181 Lupinus albus HOM05D005799 ORTHO05D007150 4.9e-09 65.1 69 44.9
Nn3g18897 Nelumbo nucifera HOM05D005799 ORTHO05D007150 4.9e-09 65.1 107 43.0
BcaC04g21070 Brassica carinata HOM05D005799 ORTHO05D007150 6.4e-09 64.7 64 53.1
C09p36040 Brassica napus HOM05D005799 ORTHO05D007150 6.4e-09 64.7 64 53.1
BolC9t56443H Brassica oleracea HOM05D005799 ORTHO05D007150 6.4e-09 64.7 64 53.1
ClCG10G000860 Citrullus lanatus HOM05D005799 ORTHO05D007150 6.4e-09 64.7 72 51.4
Sp6g06740 Schrenkiella parvula HOM05D005799 ORTHO05D007150 6.4e-09 64.7 69 52.2
THA.LOC104806452 Tarenaya hassleriana HOM05D005799 ORTHO05D007150 6.4e-09 64.7 72 51.4
A09p28470 Brassica napus HOM05D005799 ORTHO05D007150 8.4e-09 64.3 64 53.1
BraA09t38412Z Brassica rapa HOM05D005799 ORTHO05D007150 8.4e-09 64.3 64 53.1
COL.COLO4_10780 Corchorus olitorius HOM05D005799 ORTHO05D007150 8.4e-09 64.3 71 49.3
Glyma.07G067100 Glycine max HOM05D005799 ORTHO05D007150 8.4e-09 64.3 74 45.9
Lsat_1_v5_gn_3_13660 Lactuca sativa HOM05D005799 ORTHO05D007150 8.4e-09 64.3 54 59.3
Phvul.010G102500 Phaseolus vulgaris HOM05D005799 ORTHO05D007150 8.4e-09 64.3 69 46.4
TPR.G32682 Trifolium pratense HOM05D005799 ORTHO05D007150 1.1e-08 63.9 61 49.2
Gohir.A12G239300 Gossypium hirsutum HOM05D005799 ORTHO05D007150 1.4e-08 63.5 94 42.6
BcaB01g01512 Brassica carinata HOM05D005799 ORTHO05D007150 1.9e-08 63.2 64 51.6
PGR031G2117 Punica granatum HOM05D005799 ORTHO05D007150 1.9e-08 63.2 50 64.0
TWI60G1445 Tripterygium wilfordii HOM05D005799 ORTHO05D007150 1.9e-08 63.2 92 40.2
CiPaw.12G078600 Carya illinoinensis HOM05D005799 ORTHO05D007150 2.4e-08 62.8 52 53.8
Cc00_g18480 Coffea canephora HOM05D005799 ORTHO05D007150 2.4e-08 62.8 82 52.4
TPR.G37954 Trifolium pratense HOM05D005799 ORTHO05D007150 2.4e-08 62.8 52 50.0
AT4G10760 Arabidopsis thaliana HOM05D005799 ORTHO05D007150 3.2e-08 62.4 75 46.7
Ca_17312_v3 Cicer arietinum L. HOM05D005799 ORTHO05D007150 3.2e-08 62.4 52 51.9
HanXRQChr17g0534781 Helianthus annuus HOM05D005799 ORTHO05D007150 3.2e-08 62.4 98 44.9
VMungo0331G1577 Vigna mungo HOM05D005799 ORTHO05D007150 4.2e-08 62.0 78 44.9
Aa31LG9G11310 Aethionema arabicum HOM05D005799 ORTHO05D007150 5.4e-08 61.6 58 55.2
Ah.07g197850 Amaranthus hybridus HOM05D005799 ORTHO05D007150 5.4e-08 61.6 85 48.2
ECA246G3622 Erigeron canadensis HOM05D005799 ORTHO05D007150 7.1e-08 61.2 77 50.6
GSVIVG01019635001 Vitis vinifera HOM05D005799 ORTHO05D007150 7.1e-08 61.2 73 46.6
AL6G44810 Arabidopsis lyrata HOM05D005799 ORTHO05D007150 9.3e-08 60.8 75 45.3
Thecc.03G222800 Theobroma cacao HOM05D005799 ORTHO05D007150 9.3e-08 60.8 103 38.8
Atru.chr9.1907 Acer truncatum HOM05D005799 ORTHO05D007150 1.2e-07 60.5 50 60.0
CANSAT21G1656 Cannabis sativa HOM05D005799 ORTHO05D007150 1.2e-07 60.5 101 40.6
Carub.0006s2954 Capsella rubella HOM05D005799 ORTHO05D007150 1.2e-07 60.5 66 47.0
Thhalv10028481m.g Eutrema salsugineum HOM05D005799 ORTHO05D007150 1.6e-07 60.1 70 51.4
Sed0010941 Sechium edule HOM05D005799 ORTHO05D007150 1.6e-07 60.1 54 57.4
Sabra01G0061800 Salix brachista HOM05D005799 ORTHO05D007150 2.1e-07 59.7 97 40.2
Cfa011938 Carpinus fangiana HOM05D005799 ORTHO05D007150 2.7e-07 59.3 93 40.9
Haze_09149 Corylus avellana HOM05D005799 ORTHO05D007150 3.5e-07 58.9 93 40.9
MD06G1116900 Malus domestica HOM05D005799 ORTHO05D007150 1.0e-06 57.4 70 45.7
FAN18G1901 Fragaria x ananassa HOM05D005799 ORTHO05D007150 1.3e-06 57.0 71 43.7
FAN04G0556 Fragaria x ananassa HOM05D005799 ORTHO05D007150 1.7e-06 56.6 71 42.3
Prupe.5G128200 Prunus persica HOM05D005799 ORTHO05D007150 1.7e-06 56.6 74 45.9
MD14G1124400 Malus domestica HOM05D005799 ORTHO05D007150 3.0e-06 55.8 88 40.9
FvH4_5g11050 Fragaria vesca HOM05D005799 ORTHO05D007150 3.9e-06 55.5 107 37.4
Lj8C201G21 Lonicera japonica HOM05D005799 ORTHO05D007150 3.9e-06 55.5 40 65.0
Ciclev10019070m.g Citrus clementina HOM05D005799 ORTHO05D007150 5.1e-06 55.1 76 44.7
Medtr2g099870 Medicago truncatula HOM05D005799 ORTHO05D007150 5.1e-06 55.1 67 43.3
RcHm_v2.0_Chr7g0186751 Rosa chinensis HOM05D005799 ORTHO05D007150 8.7e-06 54.3 85 38.8


User provided reference genes

Program Settings