Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 0.0e+00 2123.2 1089 100.0
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 0.0e+00 1992.6 1070 96.4
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 0.0e+00 1194.5 1148 58.4
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 0.0e+00 1162.5 1148 57.5
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 4.5e-267 925.2 1159 47.9
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.4e-228 797.3 1166 43.7
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 7.0e-228 795.0 1166 43.5
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 3.6e-208 729.6 1152 40.9
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.4e-204 717.6 1145 39.4
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.3e-202 711.1 1119 39.5
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 5.6e-201 705.7 1144 38.5
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 6.2e-200 702.2 1143 38.0
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.1e-199 699.9 1143 37.9
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.1e-199 699.9 1143 37.9
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 9.0e-199 698.4 1161 39.5
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.2e-198 698.0 1150 41.0
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 2.5e-193 680.2 1161 39.4
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.0e-189 668.3 1168 37.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.0e-189 668.3 1168 37.8
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.4e-188 664.5 1132 39.2
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 5.5e-188 662.5 1175 38.6
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.1e-186 656.0 1149 39.2
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 5.7e-185 652.5 1166 38.3
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.6e-182 643.7 1167 38.3
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 5.5e-180 636.0 1161 36.3
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.2e-179 634.8 1166 37.6
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 2.1e-179 634.0 1154 36.8
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 8.7e-178 628.6 1153 36.5
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 2.3e-170 604.0 1170 36.2
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 2.3e-170 604.0 1165 35.8
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.5e-169 601.3 1169 36.0
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 7.4e-169 599.0 1131 37.4
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 1.0e-165 588.6 1159 35.3
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.9e-165 587.0 1167 36.5
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 2.9e-165 587.0 1135 36.8
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 4.7e-163 579.7 1168 35.1
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.0e-162 578.6 1160 36.1
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 2.6e-161 573.9 1135 35.9
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 6.3e-160 569.3 1137 35.6
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.1e-159 568.5 1146 35.9
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.1e-159 568.5 1135 35.5
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 4.5e-158 563.1 1162 34.2
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 7.7e-158 562.4 1155 35.8
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 3.8e-157 560.1 1154 34.7
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.4e-156 555.4 1171 34.3
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 9.4e-156 555.4 1197 33.6
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.6e-155 554.7 1150 35.0
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 4.7e-155 553.1 1155 34.1
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.9e-154 550.1 1162 34.0
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 3.9e-154 550.1 1195 33.5
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 1.5e-153 548.1 1162 34.7
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 6.3e-152 542.7 1149 35.2
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 8.2e-152 542.3 1118 35.2
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.1e-151 540.4 1138 34.7
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 7.0e-151 539.3 1163 34.2
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.6e-150 538.1 1156 34.8
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 5.0e-149 533.1 1158 34.0
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 5.5e-148 529.6 1159 33.6
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.6e-147 528.1 1158 33.4
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 4.7e-147 526.6 1087 33.9
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.3e-146 524.2 1260 32.9
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.1e-143 513.8 1142 34.9
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 4.1e-143 513.5 1150 33.1
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 1.3e-141 508.4 1152 33.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.3e-141 508.4 1162 32.6
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 3.6e-139 500.4 1141 32.5
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.4e-138 498.4 994 36.0
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 5.2e-138 496.5 1146 32.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 6.8e-138 496.1 1146 32.5
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 4.4e-137 493.4 1147 33.4
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 4.4e-137 493.4 984 36.9
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 2.8e-136 490.7 1142 32.6
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 2.8e-136 490.7 1152 32.5
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 1.1e-135 488.8 1149 32.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 1.1e-135 488.8 1103 33.9
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.1e-135 488.8 1081 33.7
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 5.4e-135 486.5 1147 32.3
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 8.6e-133 479.2 1142 32.4
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 2.5e-132 477.6 1149 31.9
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 1.2e-131 475.3 1034 33.8
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 6.1e-131 473.0 1146 31.8
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.3e-128 465.3 1140 31.3
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 1.1e-127 462.2 1143 31.1
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.2e-123 448.7 1213 30.8
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 4.0e-122 443.7 864 34.8
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 2.6e-121 441.0 1212 30.6
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 2.1e-115 421.4 910 34.8
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 2.3e-114 417.9 1152 30.5
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 3.7e-112 410.6 936 33.3
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.9e-111 408.3 893 34.3
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 3.6e-107 394.0 898 33.6
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 2.7e-102 377.9 430 48.6
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 5.6e-100 370.2 1116 28.4
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 4.7e-99 367.1 446 47.1
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.0e-98 364.0 660 38.2
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 7.8e-94 349.7 1223 26.0
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.7e-88 332.0 960 30.2
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 5.4e-87 327.0 1250 26.0
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 4.3e-68 264.2 274 51.5
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 1.6e-67 262.3 308 46.1
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.4e-63 249.2 302 46.0
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 2.5e-63 248.4 302 46.7
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 3.2e-63 248.1 302 46.7
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.5e-63 247.3 302 46.0
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 2.7e-62 245.0 302 46.0
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.0e-61 243.0 938 27.9
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 6.9e-58 230.3 795 28.6
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 8.5e-56 223.4 312 41.7
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 9.4e-55 219.9 312 40.4
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 7.9e-54 216.9 1263 21.9
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.4e-53 216.1 302 42.4
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 7.4e-52 210.3 1264 22.6
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.2e-51 208.8 235 49.8
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 3.9e-45 188.0 329 35.0
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.5e-44 186.0 235 42.6
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 2.2e-43 182.2 1143 23.3
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.2e-43 182.2 410 31.5
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 5.9e-41 174.1 175 52.0
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 3.6e-38 164.9 190 48.9
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 4.4e-36 157.9 816 24.9
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 9.7e-36 156.8 169 50.3
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 5.3e-34 151.0 172 48.3
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.0e-34 150.6 169 49.7
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.6e-33 149.4 187 44.9
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 1.6e-30 139.4 167 47.9
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 6.1e-22 110.9 262 29.8
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 5.2e-21 107.8 142 46.5
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.2e-20 106.7 368 24.7
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.7e-19 102.8 303 28.7
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.7e-17 95.5 427 26.2
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 5.6e-15 87.8 292 28.4
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 5.6e-15 87.8 107 44.9
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.8e-13 80.9 99 45.5
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.6e-12 79.0 361 24.9
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.7e-12 77.8 99 45.5
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 1.7e-11 76.3 211 28.0
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.3e-08 65.9 85 42.4
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.1e-07 63.5 137 31.4
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 8.0e-06 57.4 47 55.3


User provided reference genes

Program Settings