Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 4.4e-59 231.1 117 100.0
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 3.0e-28 128.6 72 90.3
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 4.4e-27 124.8 62 98.4
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 2.9e-26 122.1 68 85.3
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 4.1e-25 118.2 70 82.9
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 5.4e-25 117.9 68 82.4
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 5.4e-25 117.9 70 81.4
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 1.2e-24 116.7 68 83.8
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 1.6e-24 116.3 68 83.8
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 2.0e-24 115.9 70 80.0
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 2.0e-24 115.9 63 87.3
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 2.0e-24 115.9 63 87.3
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.7e-24 115.5 63 85.7
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.5e-24 115.2 72 80.6
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 4.6e-24 114.8 72 80.6
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 4.6e-24 114.8 72 80.6
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 6.0e-24 114.4 64 84.4
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 6.0e-24 114.4 68 77.9
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.7e-23 112.8 73 79.5
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 2.3e-23 112.5 71 80.3
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 2.3e-23 112.5 71 77.5
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 3.0e-23 112.1 63 81.0
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 3.9e-23 111.7 72 76.4
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 3.9e-23 111.7 72 76.4
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 3.9e-23 111.7 72 75.0
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 5.0e-23 111.3 73 74.0
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 5.0e-23 111.3 71 78.9
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 6.6e-23 110.9 72 73.6
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 6.6e-23 110.9 64 81.2
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 6.6e-23 110.9 68 79.4
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 6.6e-23 110.9 62 82.3
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 8.6e-23 110.5 72 76.4
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 8.6e-23 110.5 68 77.9
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 8.6e-23 110.5 72 77.8
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.1e-22 110.2 58 87.9
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 1.1e-22 110.2 62 82.3
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 1.5e-22 109.8 59 88.1
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 1.9e-22 109.4 68 77.9
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 1.9e-22 109.4 69 79.7
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 1.9e-22 109.4 71 77.5
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 1.9e-22 109.4 71 74.6
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 1.9e-22 109.4 69 79.7
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 1.9e-22 109.4 71 77.5
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.5e-22 109.0 61 82.0
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 2.5e-22 109.0 59 84.7
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 3.3e-22 108.6 71 74.6
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 3.3e-22 108.6 71 74.6
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 3.3e-22 108.6 59 84.7
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 4.3e-22 108.2 63 81.0
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 4.3e-22 108.2 59 84.7
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 4.3e-22 108.2 59 84.7
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 4.3e-22 108.2 59 84.7
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 4.3e-22 108.2 63 79.4
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 5.6e-22 107.8 68 76.5
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 5.6e-22 107.8 68 75.0
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 7.3e-22 107.5 72 75.0
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 7.3e-22 107.5 72 75.0
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 7.3e-22 107.5 72 73.6
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 9.5e-22 107.1 59 83.1
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 9.5e-22 107.1 59 83.1
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 9.5e-22 107.1 59 83.1
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 1.2e-21 106.7 70 74.3
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 1.2e-21 106.7 70 74.3
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.2e-21 106.7 70 71.4
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 1.2e-21 106.7 70 71.4
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 1.2e-21 106.7 68 75.0
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.2e-21 106.7 67 76.1
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 1.6e-21 106.3 68 73.5
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.6e-21 106.3 60 80.0
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.1e-21 105.9 59 81.4
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.1e-21 105.9 59 81.4
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 2.1e-21 105.9 73 69.9
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.1e-21 105.9 71 74.6
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 2.8e-21 105.5 73 69.9
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 2.8e-21 105.5 68 73.5
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 3.6e-21 105.1 60 78.3
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.6e-21 105.1 70 72.9
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.6e-21 105.1 70 72.9
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 3.6e-21 105.1 68 73.5
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 4.7e-21 104.8 71 71.8
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 4.7e-21 104.8 70 75.7
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 6.2e-21 104.4 87 58.6
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 8.0e-21 104.0 72 72.2
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.1e-20 103.6 70 70.0
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 1.1e-20 103.6 72 68.1
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 1.4e-20 103.2 58 77.6
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-20 103.2 76 63.2
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 1.8e-20 102.8 61 77.0
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 1.8e-20 102.8 69 68.1
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 2.3e-20 102.4 69 71.0
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.1e-20 102.1 58 75.9
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.1e-20 102.1 58 75.9
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.1e-20 102.1 58 75.9
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.1e-20 102.1 58 75.9
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 3.1e-20 102.1 58 75.9
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 3.1e-20 102.1 59 79.7
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 4.0e-20 101.7 73 71.2
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 4.0e-20 101.7 62 75.8
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 6.8e-20 100.9 68 70.6
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 8.9e-20 100.5 58 75.9
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 2.6e-19 99.0 73 71.2
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 4.4e-19 98.2 55 85.5
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 3.7e-18 95.1 60 75.0
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.1e-17 93.6 74 63.5
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 1.1e-17 93.6 58 74.1
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 1.9e-17 92.8 50 84.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 3.2e-17 92.0 64 68.8
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 5.4e-17 91.3 54 79.6
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 7.8e-16 87.4 61 72.1
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 3.0e-15 85.5 63 68.3
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 7.1e-09 64.3 53 62.3
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 2.3e-07 59.3 58 44.8


User provided reference genes

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