Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold35G14187 Striga asiatica HOM05D002678 ORTHO05D002920 7.0e-50 200.7 129 100.0
SalBow3G2888 Salvia bowleyana HOM05D002678 ORTHO05D002920 2.7e-17 92.4 132 40.9
Oeu035168.1 Olea europaea HOM05D002678 ORTHO05D002920 8.6e-16 87.4 155 41.3
A03p00870 Brassica napus HOM05D002678 ORTHO05D002920 1.1e-15 87.0 151 36.4
AL6G11940 Arabidopsis lyrata HOM05D002678 ORTHO05D002920 2.5e-15 85.9 156 48.1
Cfa017459 Carpinus fangiana HOM05D002678 ORTHO05D002920 3.3e-15 85.5 144 37.5
Nn2g10547 Nelumbo nucifera HOM05D002678 ORTHO05D002920 5.6e-15 84.7 139 38.1
Carub.0006s0146 Capsella rubella HOM05D002678 ORTHO05D002920 1.2e-14 83.6 159 35.2
Thhalv10014890m.g Eutrema salsugineum HOM05D002678 ORTHO05D002920 1.2e-14 83.6 158 45.6
C03p01120 Brassica napus HOM05D002678 ORTHO05D002920 1.6e-14 83.2 152 35.5
BolC3t12671H Brassica oleracea HOM05D002678 ORTHO05D002920 1.6e-14 83.2 152 35.5
AT5G02640 Arabidopsis thaliana HOM05D002678 ORTHO05D002920 2.1e-14 82.8 159 42.8
A10p33010 Brassica napus HOM05D002678 ORTHO05D002920 2.1e-14 82.8 158 40.5
BolC9t60133H Brassica oleracea HOM05D002678 ORTHO05D002920 2.1e-14 82.8 159 42.8
SGA_v2.0_scaffold94G28644 Striga asiatica HOM05D002678 ORTHO05D002920 2.1e-14 82.8 155 44.5
Dinv35670 Davidia involucrata HOM05D002678 ORTHO05D002920 3.6e-14 82.0 145 37.9
TAR623G1692 Trochodendron aralioides HOM05D002678 ORTHO05D002920 3.6e-14 82.0 138 36.2
Sp6g39880 Schrenkiella parvula HOM05D002678 ORTHO05D002920 4.7e-14 81.6 158 41.8
Aqoxy2G01947 Aquilegia oxysepala HOM05D002678 ORTHO05D002920 8.0e-14 80.9 146 38.4
BcaC06g32005 Brassica carinata HOM05D002678 ORTHO05D002920 1.4e-13 80.1 158 41.1
BcaNung03282 Brassica carinata HOM05D002678 ORTHO05D002920 1.4e-13 80.1 159 40.9
C09p73980 Brassica napus HOM05D002678 ORTHO05D002920 1.4e-13 80.1 159 40.9
BraA10t45338Z Brassica rapa HOM05D002678 ORTHO05D002920 1.4e-13 80.1 160 41.2
Glyma.13G134700 Glycine max HOM05D002678 ORTHO05D002920 1.4e-13 80.1 136 37.5
Gohir.A09G160000 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.3e-13 79.3 135 37.8
THA.LOC104826999 Tarenaya hassleriana HOM05D002678 ORTHO05D002920 2.3e-13 79.3 159 46.5
Gorai.006G177000 Gossypium raimondii HOM05D002678 ORTHO05D002920 3.1e-13 79.0 135 37.0
Manes.08G073300 Manihot esculenta HOM05D002678 ORTHO05D002920 3.1e-13 79.0 153 36.6
TAR636G3383 Trochodendron aralioides HOM05D002678 ORTHO05D002920 3.1e-13 79.0 141 36.2
BcaB01g06197 Brassica carinata HOM05D002678 ORTHO05D002920 4.0e-13 78.6 153 34.0
CARHR210710 Cardamine hirsuta HOM05D002678 ORTHO05D002920 5.2e-13 78.2 156 38.5
Lalb_Chr02g0153371 Lupinus albus HOM05D002678 ORTHO05D002920 5.2e-13 78.2 150 34.7
Haze_20701 Corylus avellana HOM05D002678 ORTHO05D002920 6.8e-13 77.8 144 37.5
Phvul.007G160800 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 6.8e-13 77.8 131 35.9
Sed0001325 Sechium edule HOM05D002678 ORTHO05D002920 6.8e-13 77.8 138 34.1
AUR62001571 Chenopodium quinoa HOM05D002678 ORTHO05D002920 8.9e-13 77.4 151 33.1
Glyma.10G046800 Glycine max HOM05D002678 ORTHO05D002920 8.9e-13 77.4 151 36.4
Glyma.19G175800 Glycine max HOM05D002678 ORTHO05D002920 8.9e-13 77.4 147 34.0
Gohir.D09G155600 Gossypium hirsutum HOM05D002678 ORTHO05D002920 8.9e-13 77.4 135 36.3
Rhsim05G0185100 Rhododendron simsii HOM05D002678 ORTHO05D002920 8.9e-13 77.4 154 36.4
AUR62020213 Chenopodium quinoa HOM05D002678 ORTHO05D002920 1.2e-12 77.0 140 42.1
TPR.G35579 Trifolium pratense HOM05D002678 ORTHO05D002920 1.2e-12 77.0 138 36.2
CiPaw.09G186200 Carya illinoinensis HOM05D002678 ORTHO05D002920 1.5e-12 76.6 140 35.7
Thecc.09G330900 Theobroma cacao HOM05D002678 ORTHO05D002920 1.5e-12 76.6 141 43.3
Glyma.03G175100 Glycine max HOM05D002678 ORTHO05D002920 2.6e-12 75.9 150 32.0
Phvul.001G172100 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 3.4e-12 75.5 143 37.8
Prupe.6G246400 Prunus persica HOM05D002678 ORTHO05D002920 3.4e-12 75.5 145 37.2
CsaV3_6G022030 Cucumis sativus L. HOM05D002678 ORTHO05D002920 4.4e-12 75.1 144 33.3
Duzib093G0125 Durio zibethinus HOM05D002678 ORTHO05D002920 5.8e-12 74.7 140 37.9
Duzib106G2004 Durio zibethinus HOM05D002678 ORTHO05D002920 5.8e-12 74.7 151 35.1
Thecc.05G048400 Theobroma cacao HOM05D002678 ORTHO05D002920 5.8e-12 74.7 135 37.8
Duzib168G1913 Durio zibethinus HOM05D002678 ORTHO05D002920 7.5e-12 74.3 141 45.4
Psat3g048080 Pisum sativum HOM05D002678 ORTHO05D002920 7.5e-12 74.3 134 48.5
EL10Ac7g16278 Beta vulgaris HOM05D002678 ORTHO05D002920 9.8e-12 73.9 142 32.4
MELO3C025706.2 Cucumis melo HOM05D002678 ORTHO05D002920 9.8e-12 73.9 146 39.0
Medtr7g100340 Medicago truncatula HOM05D002678 ORTHO05D002920 9.8e-12 73.9 139 33.8
VMungo0720G1849 Vigna mungo HOM05D002678 ORTHO05D002920 9.8e-12 73.9 136 35.3
Ca_11435_v3 Cicer arietinum L. HOM05D002678 ORTHO05D002920 1.3e-11 73.6 139 36.0
MD04G1116500 Malus domestica HOM05D002678 ORTHO05D002920 1.7e-11 73.2 157 41.4
Nn2g12832 Nelumbo nucifera HOM05D002678 ORTHO05D002920 1.7e-11 73.2 139 34.5
Sabra16G0089400 Salix brachista HOM05D002678 ORTHO05D002920 1.7e-11 73.2 144 34.7
Solyc11g072890.1 Solanum lycopersicum HOM05D002678 ORTHO05D002920 1.7e-11 73.2 152 40.1
ClCG02G020590 Citrullus lanatus HOM05D002678 ORTHO05D002920 2.2e-11 72.8 148 43.2
COL.COLO4_07093 Corchorus olitorius HOM05D002678 ORTHO05D002920 2.2e-11 72.8 135 34.8
Lj5g0022817 Lotus japonicus HOM05D002678 ORTHO05D002920 2.2e-11 72.8 145 40.0
VMungo1383G3255 Vigna mungo HOM05D002678 ORTHO05D002920 2.2e-11 72.8 141 41.1
COL.COLO4_18420 Corchorus olitorius HOM05D002678 ORTHO05D002920 4.9e-11 71.6 150 46.7
Hma1.2p1_0035F.1_g021820 Hydrangea macrophylla HOM05D002678 ORTHO05D002920 4.9e-11 71.6 150 42.7
Oeu040266.1 Olea europaea HOM05D002678 ORTHO05D002920 4.9e-11 71.6 158 46.2
Lalb_Chr25g0289391 Lupinus albus HOM05D002678 ORTHO05D002920 6.4e-11 71.2 141 33.3
Potri.006G215000 Populus trichocarpa HOM05D002678 ORTHO05D002920 6.4e-11 71.2 154 33.1
Lj1g0018959 Lotus japonicus HOM05D002678 ORTHO05D002920 1.1e-10 70.5 144 32.6
Medtr1g067350 Medicago truncatula HOM05D002678 ORTHO05D002920 1.4e-10 70.1 141 34.0
Potri.016G081600 Populus trichocarpa HOM05D002678 ORTHO05D002920 1.4e-10 70.1 143 34.3
MBI05_g32634_MAGBIO Magnolia biondii HOM05D002678 ORTHO05D002920 1.9e-10 69.7 130 40.0
QL01p034494 Quercus lobata HOM05D002678 ORTHO05D002920 1.9e-10 69.7 145 31.7
MD12G1132300 Malus domestica HOM05D002678 ORTHO05D002920 2.4e-10 69.3 157 34.4
Oeu058517.1 Olea europaea HOM05D002678 ORTHO05D002920 2.4e-10 69.3 159 41.5
PGR004G2176 Punica granatum HOM05D002678 ORTHO05D002920 2.4e-10 69.3 152 45.4
Aqoxy4G03090 Aquilegia oxysepala HOM05D002678 ORTHO05D002920 4.1e-10 68.6 148 33.1
Migut.L01639 Erythranthe guttata HOM05D002678 ORTHO05D002920 4.1e-10 68.6 121 35.5
Eucgr.K03179 Eucalyptus grandis HOM05D002678 ORTHO05D002920 4.1e-10 68.6 152 34.9
Ciclev10012982m.g Citrus clementina HOM05D002678 ORTHO05D002920 5.4e-10 68.2 157 49.7
TPR.G10526 Trifolium pratense HOM05D002678 ORTHO05D002920 7.0e-10 67.8 144 37.5
TWI53G1006 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 9.2e-10 67.4 139 33.8
Duzib150G0336 Durio zibethinus HOM05D002678 ORTHO05D002920 1.2e-09 67.0 139 33.1
RcHm_v2.0_Chr3g0467961 Rosa chinensis HOM05D002678 ORTHO05D002920 1.2e-09 67.0 152 38.2
arahy.Tifrunner.gnm1.ann1.X1SQMY Arachis hypogaea HOM05D002678 ORTHO05D002920 1.6e-09 66.6 164 33.5
Sopen11g030550 Solanum pennellii HOM05D002678 ORTHO05D002920 1.6e-09 66.6 157 37.6
MBI14_g21098_MAGBIO Magnolia biondii HOM05D002678 ORTHO05D002920 2.0e-09 66.2 144 35.4
Gohir.A08G000129 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.7e-09 65.9 141 34.0
FAN05G1053 Fragaria x ananassa HOM05D002678 ORTHO05D002920 3.5e-09 65.5 156 41.7
Gohir.D07G099200 Gossypium hirsutum HOM05D002678 ORTHO05D002920 3.5e-09 65.5 147 32.7
Gorai.001G106900 Gossypium raimondii HOM05D002678 ORTHO05D002920 3.5e-09 65.5 147 32.7
FvH4_6g14750 Fragaria vesca HOM05D002678 ORTHO05D002920 4.6e-09 65.1 153 39.2
FAN09G4043 Fragaria x ananassa HOM05D002678 ORTHO05D002920 4.6e-09 65.1 153 39.2
FAN14G4174 Fragaria x ananassa HOM05D002678 ORTHO05D002920 4.6e-09 65.1 153 39.2
Hma1.2p1_0746F.1_g212310 Hydrangea macrophylla HOM05D002678 ORTHO05D002920 4.6e-09 65.1 144 33.3
Psat6g069440 Pisum sativum HOM05D002678 ORTHO05D002920 4.6e-09 65.1 146 44.5
PGSC0003DMG400015526 Solanum tuberosum HOM05D002678 ORTHO05D002920 4.6e-09 65.1 161 41.6
ATR0759G110 Amborella trichopoda HOM05D002678 ORTHO05D002920 6.0e-09 64.7 132 32.6
Sabra06G0166000 Salix brachista HOM05D002678 ORTHO05D002920 6.0e-09 64.7 148 32.4
Duzib128G1720 Durio zibethinus HOM05D002678 ORTHO05D002920 7.8e-09 64.3 139 34.5
Migut.N02647 Erythranthe guttata HOM05D002678 ORTHO05D002920 7.8e-09 64.3 152 29.6
Gohir.A04G078100 Gossypium hirsutum HOM05D002678 ORTHO05D002920 7.8e-09 64.3 134 35.1
Gohir.D08G009900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 7.8e-09 64.3 141 33.3
Gorai.004G003100 Gossypium raimondii HOM05D002678 ORTHO05D002920 7.8e-09 64.3 141 33.3
PGR004G2814 Punica granatum HOM05D002678 ORTHO05D002920 7.8e-09 64.3 155 36.8
Sopen06g031980 Solanum pennellii HOM05D002678 ORTHO05D002920 1.0e-08 63.9 141 31.2
Sed0026303 Sechium edule HOM05D002678 ORTHO05D002920 1.3e-08 63.5 134 35.8
DCAR_017751 Daucus carota HOM05D002678 ORTHO05D002920 1.7e-08 63.2 138 29.7
SalBow3G1187 Salvia bowleyana HOM05D002678 ORTHO05D002920 1.7e-08 63.2 124 32.3
arahy.Tifrunner.gnm1.ann1.2B715G Arachis hypogaea HOM05D002678 ORTHO05D002920 3.0e-08 62.4 154 32.5
Eucgr.A01213 Eucalyptus grandis HOM05D002678 ORTHO05D002920 3.0e-08 62.4 144 29.2
FAN02G3512 Fragaria x ananassa HOM05D002678 ORTHO05D002920 3.0e-08 62.4 153 38.6
Gohir.A01G218900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 3.0e-08 62.4 148 31.1
arahy.Tifrunner.gnm1.ann1.FZ8WY7 Arachis hypogaea HOM05D002678 ORTHO05D002920 3.9e-08 62.0 154 32.5
Medtr2g096120 Medicago truncatula HOM05D002678 ORTHO05D002920 3.9e-08 62.0 70 44.3
DCAR_018868 Daucus carota HOM05D002678 ORTHO05D002920 5.0e-08 61.6 157 28.7
Dinv06291 Davidia involucrata HOM05D002678 ORTHO05D002920 5.0e-08 61.6 67 47.8
TWI74G0388 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 5.0e-08 61.6 144 34.7
TWI75G0718 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 5.0e-08 61.6 141 30.5
Cpa.g.sc3922.1 Carica papaya HOM05D002678 ORTHO05D002920 6.6e-08 61.2 73 45.2
Atru.chr8.2500 Acer truncatum HOM05D002678 ORTHO05D002920 8.6e-08 60.8 180 45.0
CSS0019295 Camellia sinensis var. sinensis HOM05D002678 ORTHO05D002920 1.1e-07 60.5 141 43.3
Cc06_g03230 Coffea canephora HOM05D002678 ORTHO05D002920 1.1e-07 60.5 156 32.1
Gorai.002G253000 Gossypium raimondii HOM05D002678 ORTHO05D002920 1.1e-07 60.5 148 30.4
Lsat_1_v5_gn_6_26380 Lactuca sativa HOM05D002678 ORTHO05D002920 1.1e-07 60.5 79 38.0
ClCG10G020770 Citrullus lanatus HOM05D002678 ORTHO05D002920 1.5e-07 60.1 143 37.8
Cc01_g12070 Coffea canephora HOM05D002678 ORTHO05D002920 1.9e-07 59.7 163 43.6
Gohir.D01G207900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.9e-07 59.7 148 30.4
Gohir.D04G117300 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.9e-07 59.7 131 33.6
Peaxi162Scf00411g00813 Petunia axillaris HOM05D002678 ORTHO05D002920 1.9e-07 59.7 78 42.3
Duzib170G1033 Durio zibethinus HOM05D002678 ORTHO05D002920 2.5e-07 59.3 135 28.9
Rhsim13G0088900 Rhododendron simsii HOM05D002678 ORTHO05D002920 3.3e-07 58.9 148 32.4
Actinidia37266 Actinidia chinensis HOM05D002678 ORTHO05D002920 4.3e-07 58.5 133 42.9
PGSC0003DMG400030480 Solanum tuberosum HOM05D002678 ORTHO05D002920 4.3e-07 58.5 144 38.9
Gohir.D03G131000 Gossypium hirsutum HOM05D002678 ORTHO05D002920 5.6e-07 58.2 143 33.6
ECA248G3075 Erigeron canadensis HOM05D002678 ORTHO05D002920 7.3e-07 57.8 156 39.1
Gohir.A03G037400 Gossypium hirsutum HOM05D002678 ORTHO05D002920 7.3e-07 57.8 143 32.9
CANSAT80G0424 Cannabis sativa HOM05D002678 ORTHO05D002920 9.5e-07 57.4 81 40.7
DCAR_015584 Daucus carota HOM05D002678 ORTHO05D002920 9.5e-07 57.4 144 28.5
Gorai.003G137800 Gossypium raimondii HOM05D002678 ORTHO05D002920 9.5e-07 57.4 143 32.9
Lsat_1_v5_gn_5_167180 Lactuca sativa HOM05D002678 ORTHO05D002920 9.5e-07 57.4 156 41.0
Nitab4.5_0000182g0070 Nicotiana tabacum HOM05D002678 ORTHO05D002920 9.5e-07 57.4 163 42.9
Nitab4.5_0000270g0250 Nicotiana tabacum HOM05D002678 ORTHO05D002920 9.5e-07 57.4 161 42.9
QL07p046064 Quercus lobata HOM05D002678 ORTHO05D002920 9.5e-07 57.4 79 40.5
SEGI_24546 Sequoiadendron giganteum HOM05D002678 ORTHO05D002920 9.5e-07 57.4 127 32.3
Lj3g0016506 Lotus japonicus HOM05D002678 ORTHO05D002920 1.2e-06 57.0 76 36.8
CiPaw.13G102100 Carya illinoinensis HOM05D002678 ORTHO05D002920 1.6e-06 56.6 74 41.9
vmacro03134 Vaccinium macrocarpon HOM05D002678 ORTHO05D002920 2.8e-06 55.8 141 31.9
HanXRQChr04g0110311 Helianthus annuus HOM05D002678 ORTHO05D002920 3.6e-06 55.5 158 36.1
Atru.chr3.3786 Acer truncatum HOM05D002678 ORTHO05D002920 6.2e-06 54.7 160 28.8


User provided reference genes

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