Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold35G14068 Striga asiatica HOM05D002916 ORTHO05D003152 1.2e-112 409.8 204 100.0
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 8.2e-29 131.3 106 67.0
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 1.1e-20 104.4 133 49.6
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 3.8e-18 95.9 106 51.9
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 1.5e-17 94.0 106 52.8
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 2.7e-16 89.7 105 51.4
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 2.7e-16 89.7 113 51.3
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 1.4e-15 87.4 103 50.5
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 5.2e-15 85.5 107 47.7
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 1.2e-14 84.3 105 50.5
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.5e-14 84.0 106 47.2
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 3.3e-14 82.8 105 48.6
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 3.3e-14 82.8 107 50.5
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 7.5e-14 81.6 108 45.4
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 9.7e-14 81.3 106 46.2
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.7e-13 80.5 108 44.4
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.7e-13 80.5 108 44.4
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 2.2e-13 80.1 106 48.1
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 3.7e-13 79.3 106 42.5
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 3.7e-13 79.3 101 47.5
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 3.7e-13 79.3 106 48.1
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 6.3e-13 78.6 108 43.5
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.1e-12 77.8 107 48.6
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.1e-12 77.8 110 47.3
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 1.1e-12 77.8 110 47.3
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 1.4e-12 77.4 105 47.6
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 1.4e-12 77.4 106 45.3
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 1.8e-12 77.0 106 48.1
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 3.1e-12 76.3 98 48.0
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 3.1e-12 76.3 98 48.0
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 5.3e-12 75.5 105 41.9
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 5.3e-12 75.5 106 45.3
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 5.3e-12 75.5 110 46.4
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 9.1e-12 74.7 108 43.5
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 9.1e-12 74.7 108 43.5
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 1.2e-11 74.3 105 45.7
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.6e-11 73.9 98 44.9
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 1.6e-11 73.9 95 45.3
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 2.0e-11 73.6 100 46.0
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 4.5e-11 72.4 107 44.9
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 4.5e-11 72.4 101 45.5
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 4.5e-11 72.4 106 42.5
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 1.0e-10 71.2 106 42.5
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 1.0e-10 71.2 106 45.3
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.3e-10 70.9 106 45.3
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.7e-10 70.5 103 41.7
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 2.9e-10 69.7 106 43.4
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 3.8e-10 69.3 106 40.6
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 5.0e-10 68.9 108 40.7
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 6.5e-10 68.6 106 42.5
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.5e-10 68.6 98 45.9
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 6.5e-10 68.6 98 45.9
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 8.5e-10 68.2 108 39.8
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 8.5e-10 68.2 108 45.4
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.1e-09 67.8 98 45.9
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 1.5e-09 67.4 110 42.7
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 2.5e-09 66.6 100 41.0
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 2.5e-09 66.6 101 42.6
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 3.2e-09 66.2 100 40.0
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.2e-09 66.2 98 44.9
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 5.5e-09 65.5 106 43.4
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 5.5e-09 65.5 100 40.0
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 5.5e-09 65.5 107 41.1
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.2e-09 65.1 98 43.9
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 9.4e-09 64.7 105 40.0
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.4e-09 64.7 98 44.9
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 1.2e-08 64.3 101 42.6
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 1.2e-08 64.3 106 37.7
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.6e-08 63.9 107 42.1
Dinv21202 Davidia involucrata HOM05D002916 ORTHO05D003152 2.1e-08 63.5 81 48.1
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.1e-08 63.5 105 41.0
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.7e-08 63.2 107 42.1
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 4.7e-08 62.4 98 41.8
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.1e-08 62.0 105 39.0
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 6.1e-08 62.0 105 39.0
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 6.1e-08 62.0 116 37.1
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 1.0e-07 61.2 105 41.0
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 1.4e-07 60.8 100 39.0
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 2.3e-07 60.1 109 38.5
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.3e-07 60.1 107 41.1
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 4.0e-07 59.3 109 37.6
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 4.0e-07 59.3 105 40.0
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 5.2e-07 58.9 98 37.8
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 6.8e-07 58.5 84 45.2
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 8.8e-07 58.2 107 38.3
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 1.2e-06 57.8 98 36.7
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 1.5e-06 57.4 105 38.1
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.5e-06 57.4 107 34.6
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 2.0e-06 57.0 108 37.0
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 2.6e-06 56.6 107 36.4
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 4.4e-06 55.8 108 38.9
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 5.7e-06 55.5 105 36.2
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 7.5e-06 55.1 104 34.6
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 7.5e-06 55.1 104 34.6
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 7.5e-06 55.1 104 35.6
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 7.5e-06 55.1 107 35.5
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 7.5e-06 55.1 98 36.7


User provided reference genes

Program Settings