Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.8e-76 289.3 156 100.0
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.3e-71 273.1 167 88.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.1e-52 210.3 158 72.2
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 6.0e-48 194.5 151 64.2
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 2.6e-43 179.1 97 81.4
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 3.4e-43 178.7 143 71.3
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 3.4e-43 178.7 149 63.1
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 5.8e-43 177.9 151 66.9
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.3e-42 176.8 97 79.4
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.3e-42 176.8 151 58.3
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.7e-42 176.4 151 67.5
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 2.9e-42 175.6 136 72.8
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 2.9e-42 175.6 136 72.8
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 2.9e-42 175.6 136 72.8
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.9e-42 175.6 151 58.3
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 4.9e-42 174.9 160 64.4
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 4.9e-42 174.9 140 66.4
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 6.5e-42 174.5 144 63.2
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 6.5e-42 174.5 151 58.3
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 6.5e-42 174.5 151 57.6
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 8.4e-42 174.1 144 63.2
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.4e-41 173.3 145 68.3
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.9e-41 172.9 145 62.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.9e-41 172.9 151 60.3
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 5.5e-41 171.4 143 60.8
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 7.1e-41 171.0 138 63.8
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 7.1e-41 171.0 151 64.9
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.6e-40 169.9 156 57.1
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-40 169.9 156 57.1
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 6.0e-40 167.9 136 60.3
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.0e-39 167.2 156 57.1
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.0e-39 167.2 150 66.0
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.0e-39 167.2 144 59.0
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.3e-39 166.8 139 60.4
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.8e-39 166.4 118 76.3
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.0e-39 165.6 150 65.3
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.0e-39 165.6 140 60.7
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 5.1e-39 164.9 144 57.6
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 6.7e-39 164.5 139 60.4
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 8.7e-39 164.1 139 61.2
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.7e-39 164.1 144 66.0
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.1e-38 163.7 94 78.7
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.1e-38 163.7 156 60.9
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.5e-38 163.3 139 61.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.5e-38 162.5 145 66.9
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.5e-38 162.5 92 79.3
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 2.5e-38 162.5 137 68.6
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 2.5e-38 162.5 124 62.9
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.3e-38 162.2 157 59.9
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 3.3e-38 162.2 136 60.3
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 3.3e-38 162.2 135 67.4
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.3e-38 162.2 148 58.1
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 4.3e-38 161.8 148 57.4
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 4.3e-38 161.8 134 66.4
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 4.3e-38 161.8 134 69.4
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 5.7e-38 161.4 147 63.9
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 7.4e-38 161.0 81 85.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 7.4e-38 161.0 154 55.8
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 9.7e-38 160.6 150 58.0
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 9.7e-38 160.6 139 59.7
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 9.7e-38 160.6 145 64.8
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.3e-37 160.2 103 75.7
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-37 159.8 156 55.8
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-37 159.8 124 70.2
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-37 159.8 119 64.7
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.6e-37 159.8 160 53.1
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.6e-37 159.8 151 57.6
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 2.8e-37 159.1 139 59.7
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 2.8e-37 159.1 138 60.9
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.7e-37 158.7 152 61.2
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 4.8e-37 158.3 129 61.2
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 6.3e-37 157.9 154 65.6
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 6.3e-37 157.9 134 63.4
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.1e-36 157.1 148 62.2
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.4e-36 156.8 155 55.5
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 1.4e-36 156.8 143 63.6
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.4e-36 156.8 147 57.1
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 6.9e-36 154.5 150 56.7
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 9.0e-36 154.1 118 66.1
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.5e-35 153.3 159 54.1
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 2.0e-35 152.9 137 64.2
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.0e-35 152.9 122 60.7
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.0e-35 152.9 146 65.1
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.0e-35 152.9 159 52.2
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.6e-35 152.5 84 81.0
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 2.6e-35 152.5 131 65.6
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 2.6e-35 152.5 152 54.6
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 3.4e-35 152.1 159 58.5
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 3.4e-35 152.1 130 63.8
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.3e-34 150.2 92 77.2
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 3.8e-34 148.7 138 64.5
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 5.0e-34 148.3 82 78.0
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 6.5e-34 147.9 75 85.3
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 6.5e-34 147.9 138 64.5
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 8.5e-34 147.5 92 72.8
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 8.5e-34 147.5 119 68.9
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.1e-33 147.1 96 68.8
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.1e-33 147.1 79 81.0
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.1e-33 147.1 124 66.1
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.9e-33 146.4 138 63.0
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 3.2e-33 145.6 75 81.3
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 5.5e-33 144.8 119 69.7
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 5.5e-33 144.8 119 69.7
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 7.2e-33 144.4 138 61.6
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 9.4e-33 144.1 146 58.2
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 2.1e-32 142.9 122 66.4
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.6e-32 142.1 150 52.7
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 3.0e-31 139.0 97 64.9
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.5e-30 136.7 136 58.8
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 4.3e-30 135.2 97 62.9
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 7.4e-30 134.4 97 62.9
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 2.8e-29 132.5 68 85.3
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 4.1e-28 128.6 146 52.7
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 2.0e-27 126.3 167 46.1
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 4.5e-27 125.2 114 53.5
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 7.7e-27 124.4 90 64.4
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.3e-26 123.6 153 45.8
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.7e-26 123.2 105 56.2
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-25 120.6 126 53.2
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.4e-25 120.2 106 67.9
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 3.2e-25 119.0 109 67.0
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 9.4e-25 117.5 100 71.0
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 9.4e-25 117.5 101 58.4
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 4.7e-24 115.2 53 88.7
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.1e-22 110.5 74 70.3
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 3.5e-19 99.0 75 60.0
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.5e-19 98.6 91 53.8
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 5.0e-18 95.1 73 68.5
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.1e-17 94.0 124 43.5
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 1.9e-17 93.2 80 51.2
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 5.5e-17 91.7 75 53.3
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.0e-15 87.4 162 41.4
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 1.5e-14 83.6 43 83.7
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 1.5e-14 83.6 88 53.4
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 2.0e-14 83.2 58 70.7
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 6.3e-13 78.2 84 64.3
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 2.0e-11 73.2 88 42.0
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 3.8e-10 68.9 75 42.7
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.1e-09 67.4 46 65.2
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 2.5e-09 66.2 45 66.7
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 2.1e-08 63.2 39 69.2
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 8.0e-08 61.2 47 59.6


User provided reference genes

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