Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.0e-108 396.7 194 100.0
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.5e-67 260.0 175 75.4
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.9e-67 259.6 171 75.4
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 3.6e-66 255.4 136 86.8
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 2.3e-65 252.7 134 88.1
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.2e-64 250.4 139 84.9
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 2.0e-64 249.6 136 85.3
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 3.4e-64 248.8 137 85.4
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.4e-64 248.4 132 87.9
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 5.7e-64 248.1 135 85.9
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 7.5e-64 247.7 135 85.2
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 9.8e-64 247.3 139 82.0
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 9.8e-64 247.3 132 87.1
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.3e-63 246.9 132 86.4
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.3e-63 246.9 143 81.1
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.3e-63 246.9 133 87.2
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.7e-63 246.5 132 87.1
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 2.8e-63 245.7 140 80.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.8e-63 245.7 132 86.4
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 3.7e-63 245.4 132 86.4
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 3.7e-63 245.4 137 83.9
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 4.8e-63 245.0 132 87.9
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 4.8e-63 245.0 132 86.4
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 8.3e-63 244.2 132 85.6
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 8.3e-63 244.2 132 85.6
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 8.3e-63 244.2 132 84.8
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.1e-62 243.8 132 85.6
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.1e-62 243.8 135 83.7
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.4e-62 243.4 132 83.3
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.4e-62 243.4 132 84.8
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.8e-62 243.0 132 84.1
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 2.4e-62 242.7 132 86.4
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 3.1e-62 242.3 132 86.4
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 3.1e-62 242.3 139 81.3
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 4.1e-62 241.9 132 83.3
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 5.4e-62 241.5 132 84.1
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 7.0e-62 241.1 132 84.1
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 7.0e-62 241.1 132 84.1
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 7.0e-62 241.1 132 86.4
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 9.1e-62 240.7 132 82.6
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.1e-62 240.7 132 84.1
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.2e-61 240.4 132 85.6
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.2e-61 240.4 132 84.8
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.6e-61 240.0 140 80.0
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.0e-61 239.6 131 84.7
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.7e-61 239.2 143 79.0
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 2.7e-61 239.2 134 82.1
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.7e-61 239.2 132 84.1
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 3.5e-61 238.8 138 81.2
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 3.5e-61 238.8 132 84.1
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 4.5e-61 238.4 131 85.5
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.0e-60 237.3 132 85.6
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.0e-60 237.3 132 83.3
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.3e-60 236.9 131 82.4
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.3e-60 236.9 130 82.3
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 2.2e-60 236.1 132 80.3
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 2.9e-60 235.7 132 81.8
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 6.5e-60 234.6 132 84.1
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 8.5e-60 234.2 132 83.3
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 8.5e-60 234.2 132 83.3
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.1e-59 233.8 132 84.8
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.5e-59 233.4 137 80.3
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.9e-59 233.0 132 82.6
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 2.5e-59 232.6 132 82.6
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 2.5e-59 232.6 132 82.6
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.5e-59 232.6 132 81.8
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.5e-59 232.6 132 79.5
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 4.2e-59 231.9 138 78.3
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 4.2e-59 231.9 132 82.6
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 5.5e-59 231.5 132 82.6
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 7.2e-59 231.1 132 82.6
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.2e-58 230.3 132 81.1
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 6.1e-58 228.0 131 80.2
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 6.1e-58 228.0 138 76.1
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 8.0e-58 227.6 119 89.1
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.0e-57 227.3 132 80.3
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.0e-57 227.3 132 78.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 2.3e-57 226.1 129 83.7
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 4.0e-57 225.3 132 80.3
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.0e-57 225.3 120 87.5
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 6.8e-57 224.6 123 86.2
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.6e-56 222.6 130 81.5
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 3.4e-56 222.2 119 87.4
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 3.4e-56 222.2 119 87.4
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 9.8e-56 220.7 132 78.8
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 1.7e-55 219.9 132 77.3
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.4e-54 216.1 131 77.1
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 7.0e-54 214.5 138 73.2
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 9.2e-54 214.2 132 75.0
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.2e-53 213.8 132 73.5
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 4.5e-53 211.8 119 81.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 7.7e-53 211.1 131 74.8
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-52 210.3 139 72.7
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 6.6e-52 208.0 119 82.4
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 3.3e-51 205.7 113 85.0
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 6.1e-50 201.4 134 69.4
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 8.0e-50 201.1 133 70.7
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 4.0e-49 198.7 143 65.0
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 1.2e-48 197.2 133 69.2
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 9.8e-48 194.1 168 64.9
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.7e-47 193.4 104 85.6
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 4.9e-47 191.8 118 75.4
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 8.3e-47 191.0 131 70.2
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.4e-46 189.5 135 68.1
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 4.1e-46 188.7 132 68.9
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 2.6e-40 169.5 96 84.4
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 7.5e-40 167.9 139 60.4
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 9.8e-40 167.5 120 71.7
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 6.4e-39 164.9 149 61.7
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 3.5e-37 159.1 103 70.9
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 4.7e-34 148.7 113 65.5
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.8e-33 146.7 89 76.4
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-33 145.2 133 55.6
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 8.9e-33 144.4 126 54.8
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.9e-31 139.4 102 70.6
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 8.6e-28 127.9 129 46.5
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 3.4e-24 115.9 125 44.0
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 4.9e-23 112.1 151 41.7
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 4.9e-23 112.1 76 71.1
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.4e-22 110.5 59 83.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.1e-19 100.9 176 38.6
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.2e-16 90.9 149 38.3
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 3.3e-11 72.8 116 35.3
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 6.2e-10 68.6 84 47.6
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 6.2e-10 68.6 72 52.8
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-09 67.4 41 80.5
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 5.3e-09 65.5 44 72.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 5.4e-06 55.5 33 72.7
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 7.1e-06 55.1 28 75.0


User provided reference genes

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