Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.8e-213 745.7 391 100.0
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 4.1e-178 628.2 390 79.5
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 3.4e-172 608.6 363 80.2
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 4.9e-171 604.7 360 80.3
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.3e-163 580.1 363 75.8
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.4e-162 575.9 360 76.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.3e-160 569.3 361 74.5
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.9e-160 568.9 360 75.8
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 4.0e-157 558.5 361 74.0
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 6.8e-157 557.8 361 73.4
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 9.8e-148 527.3 368 67.7
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 8.3e-147 524.2 364 68.7
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.2e-145 520.4 364 68.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 3.5e-145 518.8 361 67.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.0e-144 517.3 363 66.9
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.0e-144 517.3 364 68.1
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.7e-144 516.5 391 69.6
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.3e-144 516.2 348 71.0
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 3.0e-144 515.8 363 66.9
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 6.6e-144 514.6 364 67.9
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 8.6e-144 514.2 367 68.1
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.9e-143 513.1 391 63.7
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.9e-143 513.1 361 67.0
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.2e-142 510.4 393 63.4
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 2.8e-142 509.2 395 66.1
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.8e-142 509.2 364 65.9
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 6.2e-142 508.1 361 66.8
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 6.2e-142 508.1 368 65.8
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 8.1e-142 507.7 363 66.1
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.1e-141 507.3 363 66.1
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 2.3e-141 506.1 366 65.6
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.3e-141 506.1 361 69.0
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.3e-141 506.1 360 66.7
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.3e-141 506.1 362 67.4
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 3.1e-141 505.8 391 62.1
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 5.2e-141 505.0 366 65.6
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.8e-141 504.6 368 65.2
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.9e-141 504.2 366 66.7
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.9e-141 504.2 368 65.5
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.5e-140 503.4 363 66.4
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.5e-140 503.4 365 66.0
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.5e-140 503.4 365 66.3
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.0e-140 503.1 367 65.4
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.6e-140 502.7 367 65.4
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.6e-140 502.7 361 67.3
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 3.4e-140 502.3 367 65.4
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 4.4e-140 501.9 365 65.5
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 4.4e-140 501.9 365 65.5
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 4.4e-140 501.9 363 65.8
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 4.4e-140 501.9 360 67.5
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 5.8e-140 501.5 352 69.0
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 9.9e-140 500.7 363 65.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 9.9e-140 500.7 364 65.7
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.3e-139 500.4 363 65.3
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.7e-139 500.0 363 65.0
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.2e-139 499.6 388 64.9
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.2e-139 499.6 364 66.2
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 4.9e-139 498.4 363 65.3
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.4e-139 498.0 396 65.7
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.1e-138 497.3 393 61.6
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.4e-138 496.1 372 63.2
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 2.4e-138 496.1 362 65.5
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.4e-138 496.1 362 65.5
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.4e-138 496.1 373 64.6
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 2.4e-138 496.1 363 65.8
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 3.2e-138 495.7 393 64.9
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 9.2e-138 494.2 366 63.4
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 9.2e-138 494.2 366 63.4
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 9.2e-138 494.2 363 66.1
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.1e-137 493.0 366 65.6
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.7e-137 492.7 330 69.4
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.7e-137 492.7 361 65.1
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 4.6e-137 491.9 362 63.3
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.6e-137 491.9 348 66.4
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 4.6e-137 491.9 361 65.1
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.6e-137 491.9 363 65.6
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 7.8e-137 491.1 367 65.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 3.0e-136 489.2 356 66.6
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.0e-136 489.2 355 66.5
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.5e-135 486.9 355 66.8
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.5e-135 486.9 359 63.8
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 3.3e-135 485.7 359 67.7
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.6e-135 485.0 389 64.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.3e-135 484.6 360 65.3
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 1.6e-134 483.4 364 64.0
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.6e-134 483.4 367 65.1
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 2.8e-134 482.6 349 65.9
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.6e-134 482.3 352 64.2
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 3.6e-134 482.3 369 62.6
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.7e-134 481.9 330 67.9
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 6.2e-134 481.5 369 64.2
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 8.1e-134 481.1 306 73.2
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.1e-133 480.7 355 64.8
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.4e-133 480.3 350 64.6
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.2e-132 477.2 364 63.7
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.2e-132 477.2 326 66.9
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.0e-132 476.5 310 71.6
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 9.9e-132 474.2 366 62.6
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.3e-131 473.8 361 65.4
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 8.4e-131 471.1 304 73.0
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.1e-130 470.7 360 66.4
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 3.2e-130 469.2 300 73.3
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 7.1e-130 468.0 355 64.2
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 9.3e-130 467.6 391 58.6
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 9.3e-130 467.6 360 61.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.1e-127 460.7 366 62.8
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 4.3e-127 458.8 324 66.0
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 4.8e-126 455.3 317 66.6
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.4e-125 453.8 348 64.1
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.5e-124 450.3 350 62.6
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.5e-124 450.3 355 61.1
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.4e-124 449.1 330 64.5
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.4e-123 444.9 340 63.2
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.9e-122 443.4 374 59.9
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 5.4e-122 441.8 335 63.9
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.3e-122 441.0 369 59.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 4.6e-121 438.7 377 59.2
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.6e-118 430.3 352 58.8
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 4.0e-117 425.6 312 62.2
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 9.9e-116 421.0 324 60.2
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.2e-115 419.9 302 63.9
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.8e-112 410.2 322 61.5
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 3.0e-112 409.5 365 54.5
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.7e-110 402.5 321 59.2
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.4e-109 400.6 303 64.0
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.5e-107 391.7 249 70.7
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.5e-105 386.0 314 58.3
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.6e-102 377.1 275 65.5
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.4e-100 369.4 206 84.0
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.9e-99 366.3 198 83.8
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.5e-98 363.2 387 50.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.3e-98 361.3 302 59.6
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.9e-96 355.9 198 80.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.4e-93 347.4 311 55.6
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 7.4e-87 325.1 231 70.1
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 9.1e-85 318.2 219 68.9
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.7e-83 313.9 177 80.8
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.8e-77 293.9 225 60.4
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 2.5e-74 283.5 395 39.5
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.0e-71 273.9 344 42.4
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 2.6e-71 273.5 225 68.4
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.5e-68 262.7 229 58.1
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.5e-67 258.8 241 54.8
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 8.5e-67 258.5 301 42.9
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.3e-62 244.6 221 56.1
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.2e-57 228.0 315 38.7
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.0e-55 220.7 360 35.6
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.3e-51 208.0 219 47.9
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.0e-44 184.1 125 71.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.4e-31 139.8 148 50.0
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.0e-23 114.4 64 78.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.2e-22 110.9 133 42.9
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 5.4e-21 106.3 57 82.5
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.0e-19 102.1 105 49.5
unitig_8.g3591 Utricularia gibba HOM05D004580 ORTHO05D005917 1.1e-08 65.5 102 38.2
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 1.3e-06 58.5 29 82.8


User provided reference genes

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