Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 2.6e-92 342.0 176 100.0
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 7.5e-47 191.0 160 68.1
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 5.4e-45 184.9 157 65.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 4.6e-44 181.8 157 65.0
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 3.3e-42 175.6 151 64.9
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.7e-41 171.8 158 61.4
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 8.1e-41 171.0 159 59.7
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 8.1e-41 171.0 159 61.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.1e-40 170.6 157 61.8
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.4e-40 170.2 157 59.9
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.8e-40 169.9 157 61.8
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.3e-40 169.5 151 61.6
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 3.1e-40 169.1 152 61.8
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 4.0e-40 168.7 151 62.3
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 4.0e-40 168.7 160 60.0
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 4.0e-40 168.7 151 63.6
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 4.0e-40 168.7 156 60.9
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 4.0e-40 168.7 151 62.9
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 6.8e-40 167.9 162 59.3
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 6.8e-40 167.9 164 59.8
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 8.9e-40 167.5 159 59.7
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 8.9e-40 167.5 151 60.3
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 8.9e-40 167.5 151 62.3
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 8.9e-40 167.5 151 60.9
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 8.9e-40 167.5 156 60.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 8.9e-40 167.5 156 60.3
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.2e-39 167.2 151 60.3
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.2e-39 167.2 151 62.3
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.2e-39 167.2 151 59.6
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.5e-39 166.8 152 61.2
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.5e-39 166.8 164 59.1
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.5e-39 166.8 151 61.6
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.0e-39 166.4 155 60.0
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.0e-39 166.4 160 60.0
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.0e-39 166.4 160 60.0
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.6e-39 166.0 161 59.6
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.6e-39 166.0 151 60.9
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 3.4e-39 165.6 161 57.1
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.4e-39 165.6 157 58.6
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.4e-39 165.6 151 60.3
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 4.4e-39 165.2 159 57.9
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 4.4e-39 165.2 159 57.9
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 4.4e-39 165.2 151 60.9
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 4.4e-39 165.2 157 58.6
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.5e-39 164.5 159 57.9
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 7.5e-39 164.5 155 58.7
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 7.5e-39 164.5 150 60.7
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 7.5e-39 164.5 150 60.7
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 9.9e-39 164.1 151 59.6
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.3e-38 163.7 160 55.6
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.7e-38 163.3 151 60.3
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.2e-38 162.9 157 59.2
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 3.7e-38 162.2 151 58.3
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 4.9e-38 161.8 160 56.9
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 4.9e-38 161.8 159 56.6
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.9e-38 161.8 168 54.2
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 6.4e-38 161.4 159 56.6
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 6.4e-38 161.4 159 56.6
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 6.4e-38 161.4 159 56.6
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 6.4e-38 161.4 159 56.6
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 6.4e-38 161.4 150 60.7
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 6.4e-38 161.4 152 58.6
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 8.3e-38 161.0 151 57.6
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 8.3e-38 161.0 151 57.6
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-37 160.6 152 58.6
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-37 160.6 152 58.6
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-37 160.6 152 58.6
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.1e-37 160.6 157 58.0
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.4e-37 160.2 157 56.7
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.4e-37 160.2 160 56.2
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.9e-37 159.8 151 60.3
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.9e-37 159.8 157 57.3
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.9e-37 159.8 147 61.2
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 2.4e-37 159.5 151 58.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.4e-37 159.5 158 56.3
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 4.1e-37 158.7 160 55.6
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 4.1e-37 158.7 162 56.8
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.1e-37 158.7 168 53.6
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 4.1e-37 158.7 157 56.7
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 4.1e-37 158.7 159 56.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 5.4e-37 158.3 158 55.7
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 5.4e-37 158.3 158 55.7
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 5.4e-37 158.3 158 59.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 7.1e-37 157.9 161 55.3
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 7.1e-37 157.9 161 55.3
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 7.1e-37 157.9 167 53.9
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 7.1e-37 157.9 159 58.5
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.2e-36 157.1 158 56.3
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.6e-36 156.8 167 53.3
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 2.7e-36 156.0 157 55.4
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-36 156.0 157 56.1
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-36 156.0 157 56.1
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.7e-36 156.0 159 57.9
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 4.6e-36 155.2 159 56.0
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 4.6e-36 155.2 156 55.1
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 6.0e-36 154.8 155 55.5
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.0e-36 154.8 155 56.1
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 6.0e-36 154.8 156 55.8
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 6.0e-36 154.8 157 56.1
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 7.8e-36 154.5 157 56.7
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-35 154.1 152 55.3
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.0e-35 154.1 152 55.3
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.0e-35 154.1 167 52.7
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-35 153.7 155 56.1
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-35 153.3 157 55.4
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-35 152.5 155 55.5
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 3.0e-35 152.5 168 53.0
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.9e-35 152.1 155 55.5
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.6e-35 151.4 155 54.8
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 6.6e-35 151.4 157 54.8
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 8.6e-35 151.0 157 54.8
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-34 150.6 155 54.8
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-34 150.6 157 54.8
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-34 150.2 165 52.7
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.3e-34 148.7 150 54.7
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-33 147.1 156 53.2
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.6e-33 146.7 161 52.2
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.1e-33 146.4 161 52.8
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 2.8e-33 146.0 150 54.0
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.8e-33 146.0 88 81.8
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 3.6e-33 145.6 150 54.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 6.2e-33 144.8 161 51.6
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.1e-32 144.1 159 53.5
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.1e-32 144.1 200 45.0
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.4e-32 143.7 150 54.0
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.4e-32 142.9 88 80.7
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 3.1e-32 142.5 208 44.2
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 6.8e-32 141.4 155 51.0
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 8.9e-32 141.0 155 51.0
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.0e-31 139.8 167 49.1
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 7.6e-31 137.9 95 73.7
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.8e-30 135.6 155 52.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.9e-30 135.2 155 52.3
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 6.4e-30 134.8 108 69.4
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.9e-29 133.3 151 48.3
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.1e-29 131.3 155 51.6
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.3e-27 127.1 158 43.7
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.7e-27 126.7 159 49.7
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 3.0e-27 125.9 156 50.6
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.1e-26 124.0 166 46.4
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 4.3e-26 122.1 151 45.0
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 4.3e-26 122.1 161 42.2
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 9.0e-24 114.4 70 78.6
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 4.4e-23 112.1 77 74.0
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 4.4e-23 112.1 77 74.0
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-22 109.8 77 72.7
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 8.4e-22 107.8 77 70.1
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.1e-20 103.2 64 78.1
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-19 100.9 71 71.8
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 6.9e-16 88.2 162 33.3
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.4e-13 80.5 69 62.3
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 2.4e-13 79.7 151 31.1
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.3e-13 77.8 69 60.9
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 2.7e-12 76.3 55 69.1
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 7.9e-12 74.7 97 43.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.0e-11 72.8 57 64.9
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.0e-11 72.8 57 64.9
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.5e-10 69.7 98 44.9
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.3e-10 69.3 90 44.4
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.1e-08 64.3 148 27.0
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.1e-08 62.8 97 42.3
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 5.3e-08 62.0 96 30.2
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.0e-07 60.1 47 63.8
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 3.8e-06 55.8 87 40.2


User provided reference genes

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