Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3574G54364 Striga asiatica HOM05D001917 ORTHO05D012802 1.7e-58 229.2 123 100.0
SGA_v2.0_scaffold82G26205 Striga asiatica HOM05D002502 ORTHO05D012802 6.5e-13 77.8 212 35.8
SGA_v2.0_scaffold48G17828 Striga asiatica HOM05D000269 ORTHO05D012802 1.4e-12 76.6 39 100.0
SGA_v2.0_scaffold163G37977 Striga asiatica HOM05D000269 ORTHO05D012802 3.2e-12 75.5 39 97.4
Oeu049834.1 Olea europaea HOM05D001917 ORTHO05D002790 6.3e-08 61.2 46 73.9
Nitab4.5_0000948g0280 Nicotiana tabacum HOM05D001917 ORTHO05D002790 8.2e-08 60.8 39 79.5
SGA_v2.0_scaffold92G28306 Striga asiatica HOM05D001917 ORTHO05D002790 8.2e-08 60.8 35 91.4
CiPaw.06G144000 Carya illinoinensis HOM05D001917 ORTHO05D002790 1.4e-07 60.1 39 79.5
Lalb_Chr13g0295631 Lupinus albus HOM05D001917 ORTHO05D002790 1.8e-07 59.7 39 79.5
Peaxi162Scf00011g00747 Petunia axillaris HOM05D001917 ORTHO05D002790 1.8e-07 59.7 39 79.5
Oeu049833.1 Olea europaea HOM05D001917 ORTHO05D002790 2.4e-07 59.3 46 71.7
Sopen01g046250 Solanum pennellii HOM05D001917 ORTHO05D002790 2.4e-07 59.3 39 79.5
CSS0007772 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 4.1e-07 58.5 39 79.5
AUR62040515 Chenopodium quinoa HOM05D001917 ORTHO05D002790 4.1e-07 58.5 49 67.3
Duzib132G0781 Durio zibethinus HOM05D001917 ORTHO05D002790 4.1e-07 58.5 39 76.9
FAN13G3267 Fragaria x ananassa HOM05D001917 ORTHO05D002790 4.1e-07 58.5 50 62.0
Manes.07G020850 Manihot esculenta HOM05D001917 ORTHO05D002790 4.1e-07 58.5 39 76.9
Manes.10G123800 Manihot esculenta HOM05D001917 ORTHO05D002790 4.1e-07 58.5 39 76.9
Solyc01g103873.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 4.1e-07 58.5 39 76.9
Solyc01g103875.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 4.1e-07 58.5 39 76.9
Thecc.02G090500 Theobroma cacao HOM05D001917 ORTHO05D002790 4.1e-07 58.5 39 76.9
AUR62011669 Chenopodium quinoa HOM05D001917 ORTHO05D002790 5.3e-07 58.2 39 76.9
COL.COLO4_11754 Corchorus olitorius HOM05D001917 ORTHO05D002790 5.3e-07 58.2 38 78.9
Gohir.D04G163200 Gossypium hirsutum HOM05D001917 ORTHO05D002790 5.3e-07 58.2 38 78.9
Gohir.D04G163400 Gossypium hirsutum HOM05D001917 ORTHO05D002790 5.3e-07 58.2 38 78.9
Gorai.012G151300 Gossypium raimondii HOM05D001917 ORTHO05D002790 5.3e-07 58.2 38 78.9
MD15G1430600 Malus domestica HOM05D001917 ORTHO05D002790 5.3e-07 58.2 39 74.4
HPP92_011235 Vanilla planifolia HOM05D000269 ORTHO05D000216 5.3e-07 58.2 44 68.2
HPP92_027692 Vanilla planifolia HOM05D000269 ORTHO05D000216 5.3e-07 58.2 44 68.2
CSS0029941 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 7.0e-07 57.8 35 82.9
AUR62016492 Chenopodium quinoa HOM05D001917 ORTHO05D002790 7.0e-07 57.8 43 69.8
Eucgr.I02687 Eucalyptus grandis HOM05D000269 ORTHO05D000216 7.0e-07 57.8 44 68.2
FAN18G1669 Fragaria x ananassa HOM05D001917 ORTHO05D002790 7.0e-07 57.8 39 74.4
RcHm_v2.0_Chr7g0220891 Rosa chinensis HOM05D001917 ORTHO05D002790 7.0e-07 57.8 39 74.4
Dinv19392 Davidia involucrata HOM05D001917 ORTHO05D002790 9.1e-07 57.4 35 82.9
Peaxi162Scf00003g03938 Petunia axillaris HOM05D001917 ORTHO05D002790 9.1e-07 57.4 35 82.9
QL11p019446 Quercus lobata HOM05D000269 ORTHO05D000216 9.1e-07 57.4 44 68.2
THA.LOC104807120 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 9.1e-07 57.4 39 79.5
ECA247G1133 Erigeron canadensis HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 65.9
Migut.N02923 Erythranthe guttata HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 68.2
FvH4_5g38070 Fragaria vesca HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 68.2
FAN04G2491 Fragaria x ananassa HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 68.2
FAN08G1700 Fragaria x ananassa HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 68.2
FAN13G2224 Fragaria x ananassa HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 68.2
FAN18G1538 Fragaria x ananassa HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 68.2
Hma1.2p1_1108F.1_g257810 Hydrangea macrophylla HOM05D001917 ORTHO05D002790 1.2e-06 57.0 39 74.4
Manes.02G156000 Manihot esculenta HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 68.2
Prupe.1G511800 Prunus persica HOM05D000269 ORTHO05D000216 1.2e-06 57.0 44 68.2
Rhsim11G0051600 Rhododendron simsii HOM05D000269 ORTHO05D000216 1.2e-06 57.0 38 76.3
MSTRG.27788 Avicennia marina HOM05D000269 ORTHO05D000216 1.5e-06 56.6 37 78.4
Ciclev10000528m.g Citrus clementina HOM05D000269 ORTHO05D000216 1.5e-06 56.6 44 65.9
Duzib052G0052 Durio zibethinus HOM05D001917 ORTHO05D002790 1.5e-06 56.6 39 74.4
FvH4_5g28730 Fragaria vesca HOM05D001917 ORTHO05D002790 1.5e-06 56.6 35 80.0
MD08G1238800 Malus domestica HOM05D001917 ORTHO05D002790 1.5e-06 56.6 39 71.8
Nitab4.5_0000667g0140 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.5e-06 56.6 39 74.4
Nitab4.5_0008098g0040 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.5e-06 56.6 39 74.4
SHI00532 Sapria himalayana HOM05D000269 ORTHO05D000216 1.5e-06 56.6 44 63.6
TAR381G1439 Trochodendron aralioides HOM05D001917 ORTHO05D002790 1.5e-06 56.6 39 74.4
Gohir.A04G121926 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.0e-06 56.2 38 76.3
Lsat_1_v5_gn_1_4160 Lactuca sativa HOM05D000269 ORTHO05D000216 2.0e-06 56.2 44 65.9
Lsat_1_v5_gn_6_24641 Lactuca sativa HOM05D001917 ORTHO05D002790 2.0e-06 56.2 39 74.4
MBI03_g13496_MAGBIO Magnolia biondii HOM05D001917 ORTHO05D002790 2.0e-06 56.2 39 74.4
Oeu057392.2 Olea europaea HOM05D000269 ORTHO05D000216 2.0e-06 56.2 44 65.9
Os03g0195800 Oryza sativa ssp. japonica HOM05D000269 ORTHO05D000216 2.0e-06 56.2 44 65.9
Peaxi162Scf00160g01526 Petunia axillaris HOM05D000269 ORTHO05D000216 2.0e-06 56.2 44 68.2
Sopen01g046280 Solanum pennellii HOM05D001917 ORTHO05D002790 2.0e-06 56.2 39 74.4
TWI56G1141 Tripterygium wilfordii HOM05D000269 ORTHO05D000216 2.0e-06 56.2 44 65.9
CSS0011802 Camellia sinensis var. sinensis HOM05D000269 ORTHO05D000216 2.6e-06 55.8 44 65.9
Gohir.A13G036500 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.6e-06 55.8 38 76.3
Gohir.A13G066001 Gossypium hirsutum HOM05D000269 ORTHO05D000216 2.6e-06 55.8 35 77.1
Gohir.D13G034800 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.6e-06 55.8 38 76.3
Gohir.D13G055300 Gossypium hirsutum HOM05D000269 ORTHO05D000216 2.6e-06 55.8 35 77.1
Gorai.013G039300 Gossypium raimondii HOM05D001917 ORTHO05D002790 2.6e-06 55.8 38 76.3
Gorai.013G062700 Gossypium raimondii HOM05D000269 ORTHO05D000216 2.6e-06 55.8 35 77.1
MD15G1355100 Malus domestica HOM05D000269 ORTHO05D000216 2.6e-06 55.8 44 65.9
Manes.14G167500 Manihot esculenta HOM05D000269 ORTHO05D000216 2.6e-06 55.8 35 77.1
Nitab4.5_0000548g0190 Nicotiana tabacum HOM05D001917 ORTHO05D002790 2.6e-06 55.8 39 71.8
Nitab4.5_0009812g0050 Nicotiana tabacum HOM05D001917 ORTHO05D002790 2.6e-06 55.8 39 71.8
Potri.002G092500 Populus trichocarpa HOM05D000269 ORTHO05D000216 2.6e-06 55.8 44 65.9
Rhsim11G0135700 Rhododendron simsii HOM05D000269 ORTHO05D000216 2.6e-06 55.8 37 73.0
Sabra03G0007900 Salix brachista HOM05D001917 ORTHO05D002790 2.6e-06 55.8 38 73.7
Actinidia00257 Actinidia chinensis HOM05D000269 ORTHO05D000216 3.4e-06 55.5 37 75.7
arahy.Tifrunner.gnm1.ann1.900H0A Arachis hypogaea HOM05D001917 ORTHO05D002790 3.4e-06 55.5 39 74.4
arahy.Tifrunner.gnm1.ann1.AY0SR4 Arachis hypogaea HOM05D001917 ORTHO05D002790 3.4e-06 55.5 39 74.4
MSTRG.5118 Avicennia marina HOM05D001917 ORTHO05D002790 3.4e-06 55.5 38 76.3
HanXRQChr02g0044671 Helianthus annuus HOM05D000269 ORTHO05D000216 3.4e-06 55.5 44 63.6
Medtr3g073780 Medicago truncatula HOM05D000269 ORTHO05D000216 3.4e-06 55.5 44 65.9
Nn5g29019 Nelumbo nucifera HOM05D000269 ORTHO05D000216 3.4e-06 55.5 44 65.9
Oeu000236.2 Olea europaea HOM05D000269 ORTHO05D000216 3.4e-06 55.5 37 75.7
Potri.004G219100 Populus trichocarpa HOM05D001917 ORTHO05D002790 3.4e-06 55.5 39 71.8
Cfa015925 Carpinus fangiana HOM05D000269 ORTHO05D000216 4.5e-06 55.1 44 65.9
CiPaw.05G232800 Carya illinoinensis HOM05D000269 ORTHO05D000216 4.5e-06 55.1 44 65.9
Gohir.D02G213700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 4.5e-06 55.1 38 73.7
Lj1g0022502 Lotus japonicus HOM05D000269 ORTHO05D000216 4.5e-06 55.1 44 65.9
Oeu005857.1 Olea europaea HOM05D000269 ORTHO05D000216 4.5e-06 55.1 44 65.9
Prupe.1G575800 Prunus persica HOM05D001917 ORTHO05D002790 4.5e-06 55.1 39 71.8
SGA_v2.0_scaffold45G17306 Striga asiatica HOM05D000269 ORTHO05D000216 4.5e-06 55.1 37 75.7
THA.LOC104823694 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 4.5e-06 55.1 39 69.2
vmacro04767 Vaccinium macrocarpon HOM05D000269 ORTHO05D000216 4.5e-06 55.1 44 65.9
Atru.chr13.1267 Acer truncatum HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
ATR0564G460 Amborella trichopoda HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 61.4
Dinv09048 Davidia involucrata HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
Dinv13042 Davidia involucrata HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
Dinv41740 Davidia involucrata HOM05D001917 ORTHO05D002790 5.9e-06 54.7 43 65.1
Migut.N01056 Erythranthe guttata HOM05D000269 ORTHO05D000216 5.9e-06 54.7 37 75.7
Eucgr.I02684 Eucalyptus grandis HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
Gohir.A06G038200 Gossypium hirsutum HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
Gohir.D06G039700 Gossypium hirsutum HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
Gorai.010G044200 Gossypium raimondii HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
Lj1g0004836 Lotus japonicus HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 61.4
Manes.18G070500 Manihot esculenta HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 63.6
QL11p019719 Quercus lobata HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
QL11p019749 Quercus lobata HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
QL11p019780 Quercus lobata HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 65.9
Hund12646 Selenicereus undatus HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 63.6
THA.LOC104804884 Tarenaya hassleriana HOM05D000269 ORTHO05D000216 5.9e-06 54.7 44 63.6
unitig_52.g17437 Utricularia gibba HOM05D001917 ORTHO05D002790 5.9e-06 54.7 39 69.2
Atru.chr6.697 Acer truncatum HOM05D001917 ORTHO05D002790 7.7e-06 54.3 33 81.8
Duzib041G0435 Durio zibethinus HOM05D000269 ORTHO05D000216 7.7e-06 54.3 44 65.9
Lj5A255T86 Lonicera japonica HOM05D001917 ORTHO05D002790 7.7e-06 54.3 35 77.1
Lj3g0007989 Lotus japonicus HOM05D001917 ORTHO05D002790 7.7e-06 54.3 38 68.4
Nn1g05273 Nelumbo nucifera HOM05D000269 ORTHO05D000216 7.7e-06 54.3 37 75.7
Peaxi162Scf00003g03631 Petunia axillaris HOM05D000269 ORTHO05D000216 7.7e-06 54.3 84 44.0
Peaxi162Scf00152g01525 Petunia axillaris HOM05D001917 ORTHO05D002790 7.7e-06 54.3 55 54.5
Psat2g074400 Pisum sativum HOM05D000269 ORTHO05D000216 7.7e-06 54.3 44 63.6
PGR142G3237 Punica granatum HOM05D001917 ORTHO05D002790 7.7e-06 54.3 39 69.2
PGSC0003DMG400008537 Solanum tuberosum HOM05D000269 ORTHO05D000216 7.7e-06 54.3 44 63.6
SGA_v2.0_scaffold48G18020 Striga asiatica HOM05D000269 ORTHO05D000216 7.7e-06 54.3 41 68.3
TWI14G0546 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 7.7e-06 54.3 39 69.2
HPP92_004061 Vanilla planifolia HOM05D000269 ORTHO05D000216 7.7e-06 54.3 44 63.6
VMungo1309G2737 Vigna mungo HOM05D000269 ORTHO05D000216 7.7e-06 54.3 44 63.6


User provided reference genes

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