Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 4.3e-103 378.3 228 100.0
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 7.9e-65 251.1 234 67.5
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.7e-54 216.9 239 65.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.0e-48 197.6 237 53.2
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 7.5e-39 164.9 234 55.1
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 2.2e-38 163.3 259 54.1
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 3.7e-38 162.5 239 44.8
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.1e-37 161.0 232 53.4
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.8e-37 160.2 242 43.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.8e-37 160.2 242 43.4
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.1e-37 159.1 237 46.4
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 5.4e-37 158.7 239 43.9
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.4e-37 158.7 237 46.8
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 5.4e-37 158.7 227 47.6
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 1.6e-36 157.1 250 50.8
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 2.0e-36 156.8 219 46.6
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 4.5e-36 155.6 237 52.7
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.9e-36 155.2 234 47.4
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 7.7e-36 154.8 234 47.0
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 2.3e-35 153.3 230 43.5
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 2.9e-35 152.9 240 52.9
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 3.8e-35 152.5 228 43.9
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 8.6e-35 151.4 204 51.5
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.1e-34 151.0 234 48.3
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.1e-34 151.0 241 49.4
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 1.5e-34 150.6 225 50.2
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.5e-34 149.8 231 48.9
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.3e-34 149.4 244 43.9
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 4.2e-34 149.1 233 44.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 5.5e-34 148.7 227 46.7
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 7.2e-34 148.3 238 51.7
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 7.2e-34 148.3 242 47.1
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 1.2e-33 147.5 245 49.0
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 2.8e-33 146.4 234 53.4
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.6e-33 146.0 229 49.8
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 6.1e-33 145.2 89 75.3
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.4e-32 144.1 266 41.0
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.8e-32 143.7 251 41.8
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.0e-32 142.9 175 63.4
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 3.0e-32 142.9 230 49.1
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.0e-32 142.5 224 44.2
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 5.2e-32 142.1 222 48.2
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 6.8e-32 141.7 256 40.6
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 6.8e-32 141.7 236 42.8
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 6.8e-32 141.7 247 52.2
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.8e-32 141.7 228 43.9
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 6.8e-32 141.7 276 36.6
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.5e-31 140.6 244 38.5
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 2.0e-31 140.2 226 53.5
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 5.7e-31 138.7 86 74.4
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.7e-31 138.7 226 51.8
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.7e-31 138.7 226 50.9
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 5.7e-31 138.7 224 44.6
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 5.7e-31 138.7 224 44.2
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 9.8e-31 137.9 269 47.2
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 9.8e-31 137.9 230 41.7
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.3e-30 137.5 254 39.4
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.3e-30 137.5 236 52.1
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 2.2e-30 136.7 232 44.8
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 3.7e-30 136.0 270 49.3
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 4.9e-30 135.6 232 48.7
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.3e-30 135.2 188 53.7
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 8.3e-30 134.8 103 66.0
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.1e-29 134.4 225 43.6
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.4e-29 134.0 239 44.4
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.4e-29 134.0 239 44.4
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.8e-29 133.7 212 42.5
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 5.4e-29 132.1 260 48.8
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 7.0e-29 131.7 252 40.1
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.6e-28 130.6 232 47.4
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 2.0e-28 130.2 86 70.9
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 2.0e-28 130.2 244 41.8
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 2.0e-28 130.2 221 45.2
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.7e-28 129.8 90 72.2
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 3.5e-28 129.4 199 51.8
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 4.6e-28 129.0 92 65.2
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 4.6e-28 129.0 231 42.0
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 5.9e-28 128.6 249 39.8
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.0e-27 127.9 257 47.1
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 1.7e-27 127.1 213 39.9
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 2.3e-27 126.7 89 66.3
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 2.9e-27 126.3 90 70.0
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.9e-27 126.3 84 72.6
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 6.6e-27 125.2 82 69.5
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.1e-26 124.4 99 61.6
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.1e-26 124.4 114 60.5
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.5e-26 124.0 226 41.6
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 4.3e-26 122.5 101 63.4
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 5.6e-26 122.1 241 39.4
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.2e-25 120.9 220 40.5
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.6e-25 120.6 224 40.6
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 1.6e-25 120.6 228 38.2
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 2.8e-25 119.8 230 39.1
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 6.1e-25 118.6 216 40.7
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 6.1e-25 118.6 245 42.4
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.0e-24 117.9 216 40.7
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.0e-24 117.9 216 40.7
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.0e-24 117.9 96 63.5
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 3.1e-24 116.3 216 40.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 4.0e-24 115.9 238 40.8
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 4.0e-24 115.9 222 41.4
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 4.0e-24 115.9 227 42.7
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 8.9e-24 114.8 220 42.7
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 8.9e-24 114.8 220 43.6
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.2e-23 114.4 233 40.3
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.5e-23 114.0 217 40.1
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.5e-23 114.0 217 40.1
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 2.0e-23 113.6 220 43.6
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 2.0e-23 113.6 224 39.3
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 2.0e-23 113.6 234 38.5
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 3.4e-23 112.8 223 38.1
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 5.8e-23 112.1 228 45.2
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 5.8e-23 112.1 217 39.6
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 7.5e-23 111.7 220 40.0
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 9.8e-23 111.3 192 43.2
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 2.2e-22 110.2 88 60.2
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.7e-22 109.4 222 37.4
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 3.7e-22 109.4 79 64.6
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 3.7e-22 109.4 97 59.8
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 4.9e-22 109.0 238 35.7
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 4.9e-22 109.0 236 36.4
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 6.4e-22 108.6 237 40.5
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 8.3e-22 108.2 78 67.9
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 8.3e-22 108.2 114 46.5
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 2.4e-21 106.7 216 37.5
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 9.2e-21 104.8 107 51.4
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 1.2e-20 104.4 108 52.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.7e-20 103.2 64 70.3
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 2.7e-20 103.2 196 39.8
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 3.5e-20 102.8 224 42.9
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 4.6e-20 102.4 217 36.9
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.0e-19 101.3 95 49.5
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.7e-19 100.5 95 53.7
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 7.3e-18 95.1 95 52.6
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.1e-17 93.6 221 37.6
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.1e-17 93.6 221 37.6
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.3e-16 90.1 102 47.1
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 5.8e-15 85.5 77 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 8.3e-14 81.6 120 40.8
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 8.6e-11 71.6 165 34.5
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 3.1e-08 63.2 195 31.3


User provided reference genes

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