Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 9.6e-195 683.3 351 100.0
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 2.1e-112 409.8 320 71.6
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 5.8e-107 391.7 357 63.9
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 4.2e-105 385.6 356 61.0
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 5.4e-105 385.2 351 61.8
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 3.0e-103 379.4 351 60.7
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.1e-102 377.5 352 60.5
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 2.5e-102 376.3 354 59.9
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 2.5e-102 376.3 352 59.9
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.6e-101 373.6 358 60.6
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.8e-101 372.9 354 60.7
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 3.6e-101 372.5 346 61.6
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 3.6e-101 372.5 353 61.2
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 4.8e-101 372.1 351 60.4
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 4.8e-101 372.1 353 60.9
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.1e-100 370.9 351 61.5
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.4e-100 370.5 354 59.9
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 2.4e-100 369.8 352 60.8
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 3.1e-100 369.4 351 60.1
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 3.1e-100 369.4 353 60.6
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.0e-100 369.0 350 60.0
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.0e-100 369.0 350 60.0
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 4.0e-100 369.0 355 59.4
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 4.0e-100 369.0 353 59.8
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.0e-100 369.0 354 59.6
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 5.3e-100 368.6 352 59.4
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 6.9e-100 368.2 354 59.6
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 9.0e-100 367.9 356 59.3
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.2e-99 367.5 346 61.3
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 4.4e-99 365.5 354 59.3
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 5.8e-99 365.2 353 57.8
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 5.8e-99 365.2 345 61.2
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 7.6e-99 364.8 351 59.8
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 7.6e-99 364.8 352 59.9
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 7.6e-99 364.8 346 59.2
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 7.6e-99 364.8 351 60.7
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 9.9e-99 364.4 374 59.4
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.3e-98 364.0 350 59.7
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-98 364.0 351 59.8
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.3e-98 364.0 352 57.7
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 1.7e-98 363.6 353 60.3
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-98 363.6 351 59.8
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-98 363.6 351 59.8
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.8e-98 362.5 346 62.1
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 3.8e-98 362.5 346 61.3
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.9e-98 362.1 351 59.3
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 4.9e-98 362.1 350 58.9
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 6.4e-98 361.7 351 60.4
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 6.4e-98 361.7 350 59.1
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 8.4e-98 361.3 353 60.1
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 1.1e-97 360.9 349 58.2
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.9e-97 360.1 358 58.9
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.9e-97 360.1 356 60.1
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 2.4e-97 359.8 358 58.7
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.4e-97 359.8 352 58.0
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.2e-97 359.4 349 58.7
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 3.2e-97 359.4 358 57.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 4.2e-97 359.0 355 57.7
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 4.2e-97 359.0 355 58.6
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 4.2e-97 359.0 365 58.4
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 4.2e-97 359.0 365 58.4
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.4e-97 358.6 353 57.5
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 5.4e-97 358.6 349 58.5
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 5.4e-97 358.6 350 58.9
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 7.1e-97 358.2 351 60.1
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 7.1e-97 358.2 354 59.0
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 1.2e-96 357.5 357 56.6
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.2e-96 357.5 352 59.9
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.2e-96 357.5 352 59.9
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.2e-96 357.5 352 58.5
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 1.6e-96 357.1 348 59.8
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 1.6e-96 357.1 348 59.8
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 2.7e-96 356.3 361 57.9
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.7e-96 356.3 388 54.1
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 3.5e-96 355.9 348 56.9
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.5e-96 355.9 350 58.9
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 4.6e-96 355.5 353 58.9
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 4.6e-96 355.5 350 60.6
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 6.0e-96 355.1 352 59.9
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 6.0e-96 355.1 346 59.5
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 7.8e-96 354.8 346 59.5
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.0e-95 354.4 353 58.1
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.3e-95 354.0 357 58.5
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.3e-95 354.0 355 58.3
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.3e-95 353.2 342 59.9
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.3e-95 353.2 351 59.3
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 3.0e-95 352.8 357 58.5
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 8.7e-95 351.3 309 62.1
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.5e-94 350.5 354 58.8
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.5e-94 350.5 353 58.9
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.9e-94 350.1 357 56.0
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.5e-94 349.7 349 57.6
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 2.5e-94 349.7 272 66.2
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.3e-94 349.0 340 61.5
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 5.6e-94 348.6 350 59.1
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 5.6e-94 348.6 348 57.8
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 7.3e-94 348.2 342 59.1
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 7.3e-94 348.2 353 56.9
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 2.8e-93 346.3 346 57.5
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 3.6e-93 345.9 349 58.7
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 4.8e-93 345.5 333 58.9
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 6.2e-93 345.1 343 57.1
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 8.1e-93 344.7 348 56.9
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 1.4e-92 344.0 340 58.2
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 1.8e-92 343.6 342 57.3
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 3.1e-92 342.8 357 58.0
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 4.0e-92 342.4 369 56.4
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 4.0e-92 342.4 344 59.0
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 9.0e-92 341.3 259 68.7
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 1.5e-91 340.5 344 57.8
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.0e-91 340.1 347 56.5
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.6e-91 339.7 333 58.3
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 5.8e-91 338.6 349 55.0
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 7.6e-91 338.2 291 62.9
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 9.9e-91 337.8 348 58.3
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.7e-90 337.0 350 55.4
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 1.7e-90 337.0 269 65.1
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.2e-90 336.7 307 59.0
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 6.4e-90 335.1 340 56.2
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 1.1e-89 334.3 266 66.5
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 5.4e-89 332.0 332 57.2
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 5.4e-89 332.0 332 57.2
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.5e-88 329.3 344 55.8
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 3.7e-85 319.3 348 54.3
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 2.2e-82 310.1 265 63.4
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.9e-81 307.0 352 53.1
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 4.6e-80 302.4 258 62.8
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.0e-79 301.2 238 66.4
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 3.3e-78 296.2 241 64.7
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.0e-75 287.0 351 51.6
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.7e-74 283.9 244 65.6
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 3.8e-74 282.7 242 64.0
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.8e-74 282.7 265 55.8
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 3.2e-73 279.6 248 62.9
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 4.6e-72 275.8 232 64.2
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.1e-70 271.2 258 57.4
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.5e-70 270.0 244 60.2
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 4.3e-70 269.2 239 58.6
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.7e-70 268.9 329 47.7
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 4.8e-69 265.8 328 48.5
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 7.2e-57 225.3 205 61.5
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.4e-52 211.1 253 44.7
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 9.1e-52 208.4 210 54.8
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 3.2e-49 199.9 259 44.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.6e-48 197.6 153 64.1
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 5.2e-47 192.6 258 44.2
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 4.4e-46 189.5 204 52.0
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 2.0e-35 154.1 166 53.6
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 2.7e-35 153.7 254 37.0
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.0e-23 115.2 68 85.3
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 8.3e-21 105.5 78 71.8
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.4e-15 88.2 171 39.2
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 8.9e-15 85.5 97 51.5
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 3.4e-14 83.6 115 47.0
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.9e-12 77.8 42 83.3
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 4.3e-09 66.6 51 66.7


User provided reference genes

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