Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 0.0e+00 1214.9 584 100.0
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 1.1e-121 441.4 318 73.9
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 1.4e-97 361.3 319 62.1
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.5e-96 357.8 318 61.6
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 6.5e-95 352.4 318 60.7
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 5.3e-89 332.8 322 56.5
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.1e-86 325.1 321 56.7
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 2.5e-86 323.9 321 57.9
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 2.5e-86 323.9 321 56.4
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.5e-86 322.8 316 57.0
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.5e-86 322.8 316 57.0
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.7e-85 320.5 321 56.1
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.6e-85 320.1 320 56.2
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 4.7e-85 319.7 338 53.8
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 6.1e-85 319.3 319 55.8
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 6.1e-85 319.3 321 55.8
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.4e-84 318.2 321 55.1
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.4e-84 318.2 321 55.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.3e-84 317.4 320 55.0
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 3.0e-84 317.0 325 55.4
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 3.0e-84 317.0 321 56.7
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 5.1e-84 316.2 315 57.5
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.1e-83 315.1 320 54.7
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.1e-83 315.1 322 55.3
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.1e-83 315.1 321 56.7
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.5e-83 314.7 320 55.6
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.5e-83 314.7 322 56.5
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.0e-83 314.3 321 55.1
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 2.0e-83 314.3 337 54.9
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 3.3e-83 313.5 323 54.8
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.4e-83 313.2 315 54.6
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.7e-83 312.8 315 54.6
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.7e-83 312.8 315 54.6
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 7.4e-83 312.4 321 55.5
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.3e-82 311.6 319 53.6
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-82 311.6 320 55.6
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-82 311.2 314 54.1
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.7e-82 311.2 319 56.4
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.7e-82 311.2 320 54.1
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.2e-82 310.8 324 55.2
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 2.2e-82 310.8 322 54.3
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.2e-82 310.8 319 55.8
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.8e-82 310.5 321 54.5
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 3.7e-82 310.1 320 55.3
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 4.8e-82 309.7 318 55.3
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 4.8e-82 309.7 323 54.2
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 4.8e-82 309.7 329 52.3
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 4.8e-82 309.7 320 55.0
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.1e-81 308.5 319 55.8
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.4e-81 308.1 321 54.8
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.4e-81 308.1 329 52.3
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.8e-81 307.8 314 53.5
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.4e-81 307.4 322 53.7
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.1e-81 307.0 329 54.1
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 3.1e-81 307.0 320 53.4
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 5.3e-81 306.2 327 52.9
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 7.0e-81 305.8 316 55.7
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 9.1e-81 305.4 324 54.0
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.5e-80 304.7 328 52.1
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.0e-80 304.3 330 53.3
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.0e-80 304.3 320 53.8
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.0e-80 304.3 332 53.3
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 2.6e-80 303.9 340 51.5
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 2.6e-80 303.9 320 53.4
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.0e-79 302.0 321 53.6
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.3e-79 301.6 319 53.9
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.3e-79 301.6 320 54.1
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.2e-79 300.8 316 53.8
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.2e-79 300.8 319 54.2
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 2.9e-79 300.4 320 55.9
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 2.9e-79 300.4 321 53.6
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 8.5e-79 298.9 340 50.3
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 8.5e-79 298.9 320 53.4
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.1e-78 298.5 328 51.8
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 1.1e-78 298.5 331 51.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 1.1e-78 298.5 328 51.8
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.1e-78 298.5 321 52.6
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.5e-78 298.1 340 50.3
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.5e-78 298.1 327 53.8
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.9e-78 297.7 314 53.5
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.9e-78 297.7 323 53.9
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 1.9e-78 297.7 322 53.4
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.5e-78 297.4 337 51.0
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 2.5e-78 297.4 342 50.3
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 3.2e-78 297.0 320 54.4
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 4.2e-78 296.6 328 52.4
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 9.4e-78 295.4 340 50.0
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 9.4e-78 295.4 322 53.1
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 9.4e-78 295.4 321 53.3
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 1.2e-77 295.0 347 49.9
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.2e-77 295.0 330 51.8
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.6e-77 294.7 331 52.6
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 2.7e-77 293.9 332 51.8
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 3.6e-77 293.5 321 52.3
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 1.4e-76 291.6 321 53.3
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-76 291.6 321 52.6
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.8e-76 291.2 320 52.5
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 2.3e-76 290.8 319 52.4
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 5.2e-76 289.7 263 60.8
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 5.2e-76 289.7 320 53.4
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.8e-74 283.1 398 46.2
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 8.2e-74 282.3 319 51.1
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.6e-72 277.3 273 56.4
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 7.7e-72 275.8 318 50.6
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.9e-71 273.9 298 52.7
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 3.8e-71 273.5 330 47.6
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 8.0e-69 265.8 331 49.2
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 2.0e-67 261.2 291 52.2
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 7.5e-67 259.2 339 45.7
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 6.3e-66 256.1 346 44.8
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 1.8e-65 254.6 341 45.2
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 5.0e-63 246.5 230 58.7
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.3e-60 237.7 314 47.5
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 9.8e-59 232.3 247 50.6
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.3e-58 231.9 272 50.0
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 1.7e-55 221.5 253 48.6
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.7e-55 221.5 314 43.3
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 5.0e-55 219.9 355 40.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 5.0e-55 219.9 314 43.0
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 9.5e-54 215.7 251 47.4
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.2e-50 204.5 322 42.9
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.1e-49 202.2 327 40.7
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.0e-47 195.7 252 44.4
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 3.3e-46 190.7 112 79.5
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 4.7e-45 186.8 214 52.8
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 9.8e-43 179.1 236 46.6
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 2.2e-42 177.9 211 49.8
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.9e-42 177.6 112 73.2
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.1e-41 173.7 112 72.3
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-40 171.8 112 71.4
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.0e-40 171.4 112 71.4
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 2.0e-40 171.4 334 35.9
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-40 170.6 109 70.6
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.0e-40 169.9 109 71.6
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.8e-40 169.5 112 70.5
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.3e-39 168.7 293 40.6
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-39 168.7 109 72.5
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.6e-39 166.4 112 67.9
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-38 165.2 109 69.7
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.9e-38 164.9 104 72.1
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 3.3e-38 164.1 112 73.2
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-37 161.0 104 71.2
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 8.9e-36 156.0 102 71.6
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 4.4e-35 153.7 102 68.6
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 4.9e-34 150.2 283 37.1
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 8.3e-34 149.4 145 55.9
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 3.9e-31 140.6 188 48.4
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.9e-31 140.6 140 55.7
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.7e-29 133.7 82 75.6
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 8.1e-29 132.9 254 36.6
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.8e-28 129.8 84 72.6
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.6e-27 126.3 141 50.4
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.7e-26 125.2 167 47.3
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 3.9e-23 114.0 99 56.6
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.1e-20 105.9 132 47.0
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 6.8e-20 103.2 314 29.6
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-17 95.1 50 84.0
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 6.6e-15 86.7 60 68.3
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 6.6e-15 86.7 60 68.3
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.6e-15 86.7 306 28.8
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.6e-14 83.6 92 51.1
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 9.6e-14 82.8 62 61.3
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.6e-13 80.9 93 49.5
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 3.6e-13 80.9 94 45.7
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-12 79.3 93 49.5
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 2.2e-10 71.6 61 54.1
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.1e-09 69.3 109 39.4
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.7e-07 62.0 80 45.0


User provided reference genes

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