Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.1e-160 568.9 282 100.0
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.3e-117 426.8 283 77.4
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 2.9e-117 425.6 287 77.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.2e-115 420.2 287 73.9
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.4e-110 402.1 290 69.3
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 2.0e-102 376.3 293 66.6
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.0e-102 376.3 253 74.7
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 4.5e-102 375.2 255 74.1
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.3e-101 373.6 281 67.6
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.7e-101 373.2 276 68.8
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.2e-101 372.9 255 73.7
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 2.2e-101 372.9 257 72.4
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 2.9e-101 372.5 244 74.2
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 6.5e-101 371.3 273 69.6
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 8.5e-101 370.9 275 69.1
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.9e-100 369.8 237 75.9
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 7.2e-100 367.9 266 71.1
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 9.4e-100 367.5 264 69.7
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 1.6e-99 366.7 283 67.5
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 2.7e-99 365.9 249 72.7
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 3.6e-99 365.5 271 68.3
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 4.7e-99 365.2 258 71.3
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.1e-99 364.8 283 66.8
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 8.0e-99 364.4 259 69.5
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.4e-98 363.6 274 67.5
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 2.3e-98 362.8 242 74.0
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 2.3e-98 362.8 254 72.0
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 3.0e-98 362.5 279 65.9
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 4.0e-98 362.1 259 69.5
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 5.2e-98 361.7 239 73.6
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 6.7e-98 361.3 280 66.1
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 6.7e-98 361.3 274 65.7
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 8.8e-98 360.9 257 70.8
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.1e-97 360.5 281 66.2
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 1.1e-97 360.5 240 71.7
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 1.5e-97 360.1 274 66.8
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.5e-97 360.1 251 69.3
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 2.6e-97 359.4 272 68.4
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.4e-97 358.6 249 70.3
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.4e-97 358.6 249 70.3
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 5.7e-97 358.2 283 65.7
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 5.7e-97 358.2 282 65.2
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 7.4e-97 357.8 250 70.8
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 7.4e-97 357.8 283 66.1
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 7.4e-97 357.8 249 70.3
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 7.4e-97 357.8 266 67.7
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 1.3e-96 357.1 240 71.7
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 1.3e-96 357.1 240 71.7
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.7e-96 356.7 274 65.7
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 2.2e-96 356.3 238 71.4
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-96 355.9 274 66.1
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 2.8e-96 355.9 260 68.5
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 2.8e-96 355.9 260 68.5
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 2.8e-96 355.9 283 65.4
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 2.8e-96 355.9 258 70.5
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 3.7e-96 355.5 237 71.7
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 3.7e-96 355.5 254 67.3
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 4.8e-96 355.1 262 66.8
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.8e-96 355.1 249 69.5
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 4.8e-96 355.1 242 71.5
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 6.3e-96 354.8 234 72.2
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.1e-95 354.0 284 64.4
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.4e-95 353.6 279 64.5
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.4e-95 353.6 258 67.1
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.8e-95 353.2 236 72.0
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.8e-95 353.2 239 72.0
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 2.4e-95 352.8 268 66.4
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 2.4e-95 352.8 261 67.4
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 2.4e-95 352.8 240 70.8
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 3.1e-95 352.4 268 64.2
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 3.1e-95 352.4 264 66.3
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 3.1e-95 352.4 238 70.6
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 7.0e-95 351.3 250 71.6
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.2e-94 350.5 269 66.9
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 1.2e-94 350.5 256 68.4
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.2e-94 350.5 237 71.3
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.2e-94 350.5 278 65.1
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.6e-94 350.1 267 68.2
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.6e-94 350.1 240 70.8
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 2.0e-94 349.7 250 70.4
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 3.5e-94 349.0 280 65.4
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 3.5e-94 349.0 240 71.2
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.5e-94 348.6 248 70.2
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 4.5e-94 348.6 250 70.8
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.9e-94 348.2 238 70.2
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 7.7e-94 347.8 247 71.3
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 2.9e-93 345.9 249 67.9
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.0e-93 345.1 251 67.7
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.5e-92 342.8 276 63.8
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 4.2e-92 342.0 266 63.9
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 4.2e-92 342.0 266 63.9
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 5.5e-92 341.7 255 67.5
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 5.5e-92 341.7 266 63.9
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 5.5e-92 341.7 265 64.9
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 5.5e-92 341.7 223 74.0
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 9.4e-92 340.9 279 62.0
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-91 340.5 237 68.4
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 1.6e-91 340.1 238 68.5
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 3.6e-91 339.0 272 62.1
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 2.3e-90 336.3 240 68.3
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 4.0e-90 335.5 224 72.8
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 4.0e-90 335.5 244 66.4
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 8.8e-90 334.3 243 65.8
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 3.4e-89 332.4 275 60.0
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 3.4e-89 332.4 239 66.5
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 8.3e-88 327.8 222 70.7
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 8.5e-85 317.8 282 62.4
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.1e-83 313.2 265 61.5
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 8.0e-83 311.2 224 67.0
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 1.8e-82 310.1 398 46.7
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 5.2e-82 308.5 204 76.0
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.5e-81 307.0 250 63.6
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 2.6e-81 306.2 240 62.5
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 8.3e-80 301.2 238 62.6
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.8e-79 300.1 239 63.2
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 4.2e-76 288.9 238 60.1
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 2.6e-73 279.6 238 59.2
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 2.9e-69 266.2 191 69.6
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 2.5e-68 263.1 193 66.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 5.2e-66 255.4 238 56.7
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-62 244.2 268 51.1
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-60 237.3 241 52.3
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 3.3e-60 236.1 226 54.9
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.3e-60 235.7 171 67.3
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.4e-58 230.7 175 62.9
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 5.8e-57 225.3 226 53.5
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.3e-56 224.2 168 69.0
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 2.3e-53 213.4 134 78.4
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 6.2e-51 205.3 257 46.3
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.3e-45 187.6 262 43.5
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 6.2e-43 178.7 218 43.6
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 3.1e-42 176.4 105 75.2
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 3.1e-42 176.4 229 39.3
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.2e-39 166.4 210 43.3
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.0e-38 162.2 125 64.0
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 1.9e-36 157.1 87 82.8
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 4.8e-35 152.5 115 66.1
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 5.3e-34 149.1 124 61.3
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.1e-31 141.4 83 79.5
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 6.6e-29 132.1 103 61.2
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.6e-27 127.5 146 47.3
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 7.1e-23 112.1 87 64.4
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 9.3e-23 111.7 80 67.5
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.3e-21 107.8 212 31.6
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 8.1e-19 98.6 64 68.8
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 3.5e-14 83.2 86 52.3
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.8e-13 80.9 48 77.1
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 3.9e-13 79.7 39 92.3
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 2.6e-09 67.0 206 29.1
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.6e-09 67.0 205 29.8
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 7.6e-09 65.5 247 27.1
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.3e-08 64.7 198 28.3
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.9e-08 63.5 187 29.4
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 3.8e-08 63.2 246 26.8
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 5.0e-08 62.8 244 26.6
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.1e-07 61.6 174 28.7
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 1.4e-07 61.2 190 30.5
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 2.5e-07 60.5 205 28.8
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.5e-07 60.5 28 96.4
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 3.2e-07 60.1 205 28.8
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 3.2e-07 60.1 196 28.6
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 3.2e-07 60.1 206 28.2
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 5.5e-07 59.3 259 27.4
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 9.3e-07 58.5 199 29.1
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 1.2e-06 58.2 196 28.1
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 1.6e-06 57.8 204 28.9
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 1.6e-06 57.8 212 27.4
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 2.1e-06 57.4 192 27.6
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 2.1e-06 57.4 241 27.8
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 3.5e-06 56.6 205 27.3
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 4.6e-06 56.2 187 27.3
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 4.6e-06 56.2 212 27.8
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 4.6e-06 56.2 196 27.6
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.1e-06 55.8 37 70.3


User provided reference genes

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