Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.3e-54 216.1 102 100.0
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 4.1e-29 131.3 82 79.3
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.7e-27 125.9 83 73.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 2.5e-26 122.1 81 69.1
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.6e-25 119.4 82 72.0
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 2.1e-25 119.0 104 61.5
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 2.1e-25 119.0 82 70.7
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.6e-25 118.2 81 70.4
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 3.6e-25 118.2 74 77.0
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 4.7e-25 117.9 103 56.3
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.4e-24 116.3 83 71.1
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.4e-24 116.3 84 72.6
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 1.8e-24 115.9 83 69.9
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.8e-24 115.9 81 66.7
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 1.8e-24 115.9 82 65.9
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.8e-24 115.9 82 69.5
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.8e-24 115.9 83 72.3
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.8e-24 115.9 82 70.7
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.8e-24 115.9 82 70.7
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.8e-24 115.9 82 70.7
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.0e-24 114.8 81 69.1
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 6.8e-24 114.0 82 68.3
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.9e-24 113.6 83 66.3
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 8.9e-24 113.6 85 64.7
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 8.9e-24 113.6 85 64.7
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 8.9e-24 113.6 81 67.9
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 8.9e-24 113.6 81 66.7
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 8.9e-24 113.6 82 68.3
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 1.5e-23 112.8 81 65.4
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.0e-23 112.5 82 68.3
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.6e-23 112.1 84 70.2
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.6e-23 112.1 81 65.4
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.6e-23 112.1 81 63.0
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.4e-23 111.7 81 65.4
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.4e-23 111.7 81 65.4
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 4.4e-23 111.3 81 64.2
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 4.4e-23 111.3 78 65.4
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 5.7e-23 110.9 83 66.3
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 5.7e-23 110.9 83 63.9
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 7.5e-23 110.5 81 65.4
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 7.5e-23 110.5 83 65.1
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 7.5e-23 110.5 92 57.6
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 9.8e-23 110.2 82 69.5
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 9.8e-23 110.2 81 60.5
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 1.3e-22 109.8 83 63.9
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.7e-22 109.4 83 63.9
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.7e-22 109.4 65 78.5
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 2.2e-22 109.0 83 62.7
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.2e-22 109.0 79 65.8
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 2.8e-22 108.6 81 61.7
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 2.8e-22 108.6 79 65.8
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 3.7e-22 108.2 93 59.1
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.7e-22 108.2 85 62.4
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 3.7e-22 108.2 83 63.9
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 4.9e-22 107.8 83 63.9
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 4.9e-22 107.8 73 68.5
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 4.9e-22 107.8 82 57.3
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 4.9e-22 107.8 66 74.2
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 4.9e-22 107.8 66 74.2
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 6.3e-22 107.5 81 63.0
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 6.3e-22 107.5 84 63.1
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 6.3e-22 107.5 72 69.4
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 6.3e-22 107.5 83 62.7
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 8.3e-22 107.1 83 65.1
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 1.1e-21 106.7 60 81.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 1.1e-21 106.7 81 65.4
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 1.4e-21 106.3 81 63.0
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.4e-21 106.3 89 62.9
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.4e-21 106.3 87 57.5
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 1.8e-21 105.9 83 62.7
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.8e-21 105.9 66 71.2
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.4e-21 105.5 60 76.7
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 3.1e-21 105.1 81 66.7
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 4.1e-21 104.8 81 59.3
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 4.1e-21 104.8 60 76.7
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 5.4e-21 104.4 90 60.0
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 5.4e-21 104.4 81 59.3
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.4e-21 104.4 88 59.1
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 7.0e-21 104.0 59 74.6
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 7.0e-21 104.0 75 65.3
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 7.0e-21 104.0 75 65.3
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 7.0e-21 104.0 81 61.7
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 7.0e-21 104.0 81 60.5
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 7.0e-21 104.0 83 61.4
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 7.0e-21 104.0 72 70.8
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 9.2e-21 103.6 50 88.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 9.2e-21 103.6 50 88.0
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 9.2e-21 103.6 81 61.7
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 9.2e-21 103.6 81 58.0
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 9.2e-21 103.6 81 58.0
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 9.2e-21 103.6 82 64.6
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 9.2e-21 103.6 81 64.2
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 9.2e-21 103.6 58 79.3
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.2e-20 103.2 62 77.4
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.2e-20 103.2 60 75.0
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.2e-20 103.2 83 61.4
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 1.6e-20 102.8 83 63.9
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.0e-20 102.4 62 77.4
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.0e-20 102.4 66 69.7
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.5e-20 101.7 58 75.9
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 3.5e-20 101.7 54 81.5
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 3.5e-20 101.7 50 86.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 4.5e-20 101.3 60 73.3
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 4.5e-20 101.3 60 73.3
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 4.5e-20 101.3 60 73.3
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 4.5e-20 101.3 82 63.4
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 4.5e-20 101.3 53 79.2
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 7.8e-20 100.5 65 69.2
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.0e-19 100.1 74 64.9
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.3e-19 99.8 51 82.4
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.3e-19 99.8 80 58.8
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.3e-19 99.0 51 82.4
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 2.3e-19 99.0 50 82.0
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 2.3e-19 99.0 48 87.5
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 3.8e-19 98.2 74 62.2
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 5.0e-19 97.8 51 82.4
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 5.0e-19 97.8 81 61.7
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 6.6e-19 97.4 49 87.8
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 8.6e-19 97.1 83 56.6
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 8.6e-19 97.1 83 56.6
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 8.6e-19 97.1 59 76.3
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 1.1e-18 96.7 51 80.4
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.1e-18 96.7 56 69.6
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.5e-18 96.3 81 58.0
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.5e-18 96.3 81 58.0
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.5e-18 96.3 47 85.1
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.5e-18 95.5 51 78.4
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 2.5e-18 95.5 81 56.8
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 2.5e-18 95.5 81 56.8
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 5.6e-18 94.4 51 78.4
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 9.5e-18 93.6 90 52.2
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 9.5e-18 93.6 90 52.2
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 9.5e-18 93.6 51 74.5
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.6e-17 92.8 65 67.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 2.8e-17 92.0 66 62.1
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 3.6e-17 91.7 47 74.5
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 3.6e-17 91.7 51 74.5
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.1e-17 90.9 87 50.6
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.0e-16 90.1 78 61.5
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.4e-16 89.7 43 86.0
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.4e-16 89.7 62 64.5
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 3.0e-16 88.6 53 67.9
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 4.0e-16 88.2 51 70.6
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 4.0e-16 88.2 51 70.6
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 8.9e-16 87.0 86 46.5
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 8.9e-16 87.0 72 63.9
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 1.2e-15 86.7 72 62.5
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 7.5e-15 84.0 83 47.0
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 2.9e-14 82.0 42 76.2
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.8e-13 79.3 74 55.4
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.7e-11 72.8 62 61.3
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 8.6e-11 70.5 56 60.7
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.2e-09 66.6 62 53.2
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 4.7e-09 64.7 58 56.9


User provided reference genes

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