Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 6.1e-138 494.2 257 100.0
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 1.7e-108 396.4 254 81.1
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 1.3e-100 370.2 271 73.1
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.7e-92 343.2 257 70.8
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 2.0e-80 303.1 260 59.6
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 5.8e-80 301.6 241 66.4
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 6.6e-76 288.1 240 63.8
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.9e-75 286.6 233 64.8
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.1e-74 283.1 230 63.0
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 6.2e-74 281.6 254 61.0
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.4e-73 280.4 254 61.0
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 2.3e-73 279.6 232 62.1
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 4.0e-73 278.9 242 62.0
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 4.0e-73 278.9 254 60.2
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 8.9e-73 277.7 230 62.2
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 1.2e-72 277.3 253 57.3
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 5.8e-72 275.0 231 62.3
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 7.6e-72 274.6 233 61.4
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 2.9e-71 272.7 209 68.4
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 2.9e-71 272.7 228 64.0
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 8.4e-71 271.2 236 58.9
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 8.4e-71 271.2 237 61.6
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 8.4e-71 271.2 228 63.2
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.1e-70 270.8 228 62.3
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.4e-70 270.4 230 61.3
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 1.9e-70 270.0 228 63.2
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.1e-70 268.9 232 60.3
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 5.4e-70 268.5 229 61.6
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 5.4e-70 268.5 228 61.0
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 7.1e-70 268.1 228 62.7
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 2.1e-69 266.5 231 60.2
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 4.6e-69 265.4 256 57.8
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 6.0e-69 265.0 249 55.8
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.3e-68 263.1 228 61.4
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 3.0e-68 262.7 235 58.7
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.1e-67 260.8 237 58.6
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.1e-67 260.8 238 58.0
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 1.9e-67 260.0 230 58.7
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 3.3e-67 259.2 237 56.5
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 3.3e-67 259.2 228 58.3
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 5.6e-67 258.5 234 58.1
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 7.3e-67 258.1 228 59.2
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 9.6e-67 257.7 240 59.2
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 9.6e-67 257.7 233 57.5
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.1e-66 256.5 241 57.3
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 4.7e-66 255.4 240 58.3
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 4.7e-66 255.4 227 58.1
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.7e-66 255.4 231 57.1
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 8.1e-66 254.6 228 59.2
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 8.1e-66 254.6 234 59.4
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 8.1e-66 254.6 255 55.7
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-65 254.2 239 56.5
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.1e-65 254.2 238 56.3
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-65 253.8 240 55.8
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.4e-65 253.8 254 54.7
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.8e-65 253.4 243 57.2
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 3.1e-65 252.7 240 55.4
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 3.1e-65 252.7 230 58.3
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 4.0e-65 252.3 239 56.1
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 4.0e-65 252.3 235 58.3
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 4.0e-65 252.3 234 59.0
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 5.2e-65 251.9 257 56.0
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 6.9e-65 251.5 232 57.8
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 6.9e-65 251.5 229 57.2
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 6.9e-65 251.5 221 59.7
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.2e-64 250.8 239 55.6
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.2e-64 250.8 227 57.3
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 3.4e-64 249.2 247 55.9
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 3.4e-64 249.2 240 55.8
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 5.8e-64 248.4 237 56.1
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 5.8e-64 248.4 234 56.8
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 9.9e-64 247.7 233 56.2
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.3e-63 247.3 251 54.2
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.7e-63 246.9 242 55.8
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 1.7e-63 246.9 227 55.9
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 2.2e-63 246.5 228 57.5
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 4.9e-63 245.4 227 56.8
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 4.9e-63 245.4 227 56.4
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.4e-62 243.8 268 54.1
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 1.4e-62 243.8 257 52.1
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 2.4e-62 243.0 247 54.7
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 7.3e-59 231.5 237 52.3
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 4.8e-58 228.8 248 52.0
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 4.8e-58 228.8 224 55.4
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 7.6e-56 221.5 220 53.2
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 7.1e-54 214.9 200 53.5
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 7.1e-54 214.9 244 50.4
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 7.9e-53 211.5 250 48.4
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.0e-52 211.1 235 47.2
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.3e-52 210.7 342 38.6
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.8e-52 210.3 226 51.3
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 3.0e-52 209.5 227 50.7
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.0e-52 209.5 224 52.2
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 8.7e-52 208.0 226 50.9
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.5e-51 207.2 224 51.3
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.9e-51 206.8 224 51.8
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 4.8e-50 202.2 241 46.9
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.8e-49 200.3 226 50.0
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 3.1e-49 199.5 246 47.2
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 4.0e-49 199.1 234 50.0
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.5e-48 197.2 222 51.4
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 6.4e-47 191.8 228 48.7
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 6.4e-47 191.8 228 48.7
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-46 190.7 224 46.9
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.6e-42 177.2 180 53.9
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 3.1e-41 172.9 234 42.7
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 5.8e-40 168.7 162 55.6
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 5.8e-40 168.7 162 55.6
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 8.4e-39 164.9 233 45.1
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 1.3e-36 157.5 241 38.2
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 4.3e-35 152.5 206 46.6
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 5.7e-35 152.1 141 56.7
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 8.2e-34 148.3 133 59.4
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.5e-32 144.1 125 62.4
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 4.5e-32 142.5 227 40.5
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.7e-31 140.6 227 34.8
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 8.7e-28 128.3 248 35.5
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.1e-27 127.9 226 35.4
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 4.5e-24 115.9 136 51.5
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.7e-23 114.0 231 32.0
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 9.4e-22 108.2 114 52.6
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 3.0e-20 103.2 85 60.0
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.4e-16 89.7 77 59.7
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 2.2e-15 87.0 177 34.5
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 3.9e-12 76.3 122 41.0
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 3.9e-12 76.3 122 41.0
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 5.2e-12 75.9 122 40.2
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 5.2e-12 75.9 122 40.2
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 2.6e-11 73.6 158 34.2
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 4.4e-11 72.8 125 35.2
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 5.7e-11 72.4 122 39.3
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 6.3e-10 68.9 38 78.9
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.8e-09 67.4 45 57.8
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 3.1e-09 66.6 282 26.2
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 4.1e-09 66.2 86 47.7
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 2.0e-08 63.9 201 29.9
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.3e-07 61.2 35 77.1
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.3e-07 61.2 35 77.1
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.3e-07 61.2 35 77.1
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.3e-07 61.2 35 77.1
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.3e-07 61.2 35 77.1
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 3.8e-07 59.7 35 74.3
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 1.1e-06 58.2 156 32.1
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 1.5e-06 57.8 75 45.3
SGA_v2.0_scaffold17G08150 Striga asiatica HOM05D008771 ORTHO05D010664 1.9e-06 57.4 30 86.7
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 5.5e-06 55.8 57 50.9


User provided reference genes

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