Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13793 Striga asiatica HOM05D010484 ORTHO05D010242 3.5e-98 361.7 190 100.0
SGA_v2.0_scaffold130G34346 Striga asiatica HOM05D010484 ORTHO05D001329 4.3e-24 115.5 271 38.0
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 7.4e-24 114.8 240 38.3
SalBow8G4768 Salvia bowleyana HOM05D010484 ORTHO05D010242 4.8e-23 112.1 220 42.7
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 1.1e-22 110.9 252 37.7
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 1.8e-22 110.2 244 39.8
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 1.1e-19 100.9 226 37.6
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 4.2e-19 99.0 227 38.3
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 2.1e-18 96.7 204 37.7
MSTRG.15244 Avicennia marina HOM05D010484 ORTHO05D010242 5.7e-16 88.6 208 35.6
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 3.7e-15 85.9 247 34.0
Oeu025352.2 Olea europaea HOM05D001501 ORTHO05D001329 1.8e-14 83.6 174 39.7
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 2.9e-12 76.3 175 35.4
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 3.8e-12 75.9 218 32.6
Migut.M00772 Erythranthe guttata HOM05D016023 ORTHO05D010242 1.1e-11 74.3 143 41.3
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 1.4e-11 73.9 203 34.5
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 7.2e-11 71.6 191 36.6
PGSC0003DMG400012438 Solanum tuberosum HOM05D010484 ORTHO05D010242 1.2e-10 70.9 211 36.5
HanXRQChr13g0391171 Helianthus annuus HOM05D016023 ORTHO05D010242 2.7e-10 69.7 138 36.2
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 2.7e-10 69.7 180 37.8
Solyc07g062740.4 Solanum lycopersicum HOM05D010484 ORTHO05D010242 4.7e-10 68.9 226 38.1
Sopen07g030970 Solanum pennellii HOM05D010484 ORTHO05D010242 7.9e-10 68.2 230 37.0
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 1.0e-09 67.8 154 35.1
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 1.4e-09 67.4 229 32.3
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 3.0e-09 66.2 223 33.6
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 3.0e-09 66.2 159 35.2
Lsat_1_v5_gn_9_98300 Lactuca sativa HOM05D016023 ORTHO05D010242 3.0e-09 66.2 164 32.3
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 3.9e-09 65.9 162 34.0
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 3.9e-09 65.9 162 34.0
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 3.9e-09 65.9 265 30.6
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 3.9e-09 65.9 168 35.1
HanXRQChr10g0317071 Helianthus annuus HOM05D016023 ORTHO05D010242 5.1e-09 65.5 142 36.6
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 6.7e-09 65.1 158 34.8
HanXRQChr10g0317081 Helianthus annuus HOM05D016023 ORTHO05D010242 6.7e-09 65.1 142 36.6
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 8.8e-09 64.7 156 34.6
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 8.8e-09 64.7 175 36.0
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 1.5e-08 63.9 220 33.2
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 2.0e-08 63.5 224 32.6
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.0e-08 63.5 228 31.6
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 3.3e-08 62.8 225 30.7
DCAR_017119 Daucus carota HOM05D010484 ORTHO05D010242 5.7e-08 62.0 153 32.7
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 9.7e-08 61.2 207 31.4
ECA240G0649 Erigeron canadensis HOM05D016023 ORTHO05D010242 9.7e-08 61.2 148 35.8
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 9.7e-08 61.2 154 34.4
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 1.3e-07 60.8 139 35.3
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.7e-07 60.5 178 33.7
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 2.8e-07 59.7 154 31.8
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 3.7e-07 59.3 185 31.9
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 4.8e-07 58.9 139 34.5
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 6.3e-07 58.5 154 31.2
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 6.3e-07 58.5 154 31.2
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 6.3e-07 58.5 177 34.5
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 8.2e-07 58.2 204 28.4
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 1.4e-06 57.4 181 34.3
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 1.8e-06 57.0 139 34.5
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 2.4e-06 56.6 220 32.7
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 3.1e-06 56.2 154 33.8
Actinidia18779 Actinidia chinensis HOM05D010484 ORTHO05D001329 4.1e-06 55.8 149 32.9
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 4.1e-06 55.8 154 34.4
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 5.3e-06 55.5 165 33.3
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 5.3e-06 55.5 203 31.0
Lsat_1_v5_gn_5_127461 Lactuca sativa HOM05D016023 ORTHO05D010242 9.1e-06 54.7 186 31.2


User provided reference genes

Program Settings