Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13769 Striga asiatica HOM05D000345 ORTHO05D000215 1.4e-78 296.2 151 100.0
SGA_v2.0_scaffold73G24209 Striga asiatica HOM05D000345 ORTHO05D000215 1.1e-19 100.5 70 77.1
Cc05_g11430 Coffea canephora HOM05D000345 ORTHO05D000215 2.6e-19 99.4 91 58.2
MSTRG.14951 Avicennia marina HOM05D000345 ORTHO05D000215 9.7e-19 97.4 92 58.7
SalBow8G0709 Salvia bowleyana HOM05D000345 ORTHO05D000215 1.3e-18 97.1 86 60.5
SalBow8G5341 Salvia bowleyana HOM05D000345 ORTHO05D000215 1.3e-18 97.1 86 60.5
Dinv18340 Davidia involucrata HOM05D000345 ORTHO05D000215 2.4e-17 92.8 99 57.6
Peaxi162Scf00069g00202 Petunia axillaris HOM05D000345 ORTHO05D000215 9.1e-17 90.9 117 51.3
Dinv14964 Davidia involucrata HOM05D000345 ORTHO05D000215 1.6e-16 90.1 86 62.8
Hma1.2p1_0688F.1_g203650 Hydrangea macrophylla HOM05D000345 ORTHO05D000215 2.6e-16 89.4 94 55.3
TAR600G0001 Trochodendron aralioides HOM05D000345 ORTHO05D000215 2.6e-16 89.4 90 57.8
TAR629G1195 Trochodendron aralioides HOM05D000345 ORTHO05D000215 3.5e-16 89.0 90 60.0
MSTRG.6808 Avicennia marina HOM05D000345 ORTHO05D000215 5.9e-16 88.2 96 53.1
Nitab4.5_0005709g0020 Nicotiana tabacum HOM05D000345 ORTHO05D000215 5.9e-16 88.2 91 58.2
unitig_46.g18312 Utricularia gibba HOM05D000345 ORTHO05D000215 1.3e-15 87.0 80 58.8
Oeu061339.1 Olea europaea HOM05D000345 ORTHO05D000215 1.7e-15 86.7 91 53.8
Nn1g09015 Nelumbo nucifera HOM05D000345 ORTHO05D000215 8.5e-15 84.3 95 56.8
unitig_37.g12561 Utricularia gibba HOM05D000345 ORTHO05D000215 8.5e-15 84.3 77 62.3
Aqoxy1G02192 Aquilegia oxysepala HOM05D000345 ORTHO05D000215 1.1e-14 84.0 90 57.8
Lj1P834T10 Lonicera japonica HOM05D000345 ORTHO05D000215 1.1e-14 84.0 77 61.0
Oeu051103.1 Olea europaea HOM05D000345 ORTHO05D000215 1.5e-14 83.6 77 61.0
SalBow7G4065 Salvia bowleyana HOM05D000345 ORTHO05D000215 2.5e-14 82.8 77 62.3
SalBow7G4311 Salvia bowleyana HOM05D000345 ORTHO05D000215 2.5e-14 82.8 77 62.3
Nitab4.5_0003077g0060 Nicotiana tabacum HOM05D000345 ORTHO05D000215 3.2e-14 82.4 91 54.9
MSTRG.14218 Avicennia marina HOM05D000345 ORTHO05D000215 5.5e-14 81.6 89 53.9
MBI07_g17041_MAGBIO Magnolia biondii HOM05D000345 ORTHO05D000215 7.2e-14 81.3 71 67.6
CAN.G162.24 Capsicum annuum HOM05D000345 ORTHO05D000215 9.4e-14 80.9 80 58.8
Cpa.g.sc131.71 Carica papaya HOM05D000345 ORTHO05D000215 9.4e-14 80.9 86 60.5
MD03G1239100 Malus domestica HOM05D000345 ORTHO05D000215 2.1e-13 79.7 87 55.2
PGSC0003DMG400012396 Solanum tuberosum HOM05D000345 ORTHO05D000215 2.7e-13 79.3 72 65.3
unitig_46.g18311 Utricularia gibba HOM05D000345 ORTHO05D000215 2.7e-13 79.3 79 58.2
CSS0020622 Camellia sinensis var. sinensis HOM05D000345 ORTHO05D000215 3.6e-13 79.0 92 56.5
Migut.M00750 Erythranthe guttata HOM05D000345 ORTHO05D000215 3.6e-13 79.0 80 60.0
unitig_37.g12562 Utricularia gibba HOM05D000345 ORTHO05D000215 3.6e-13 79.0 82 53.7
Nitab4.5_0000246g0120 Nicotiana tabacum HOM05D000345 ORTHO05D000215 4.7e-13 78.6 95 54.7
Actinidia18788 Actinidia chinensis HOM05D000345 ORTHO05D000215 6.1e-13 78.2 95 50.5
Peaxi162Scf00000g00252 Petunia axillaris HOM05D000345 ORTHO05D000215 6.1e-13 78.2 89 51.7
Sed0019524 Sechium edule HOM05D000345 ORTHO05D000215 6.1e-13 78.2 86 53.5
Solyc07g062680.3 Solanum lycopersicum HOM05D000345 ORTHO05D000215 6.1e-13 78.2 75 61.3
PGSC0003DMG400015377 Solanum tuberosum HOM05D000345 ORTHO05D000215 6.1e-13 78.2 104 49.0
unitig_85.g27412 Utricularia gibba HOM05D000345 ORTHO05D000215 6.1e-13 78.2 81 58.0
MD11G1258900 Malus domestica HOM05D000345 ORTHO05D000215 8.0e-13 77.8 78 57.7
Oeu025346.1 Olea europaea HOM05D000345 ORTHO05D000215 8.0e-13 77.8 77 57.1
MELO3C016092.2 Cucumis melo HOM05D000345 ORTHO05D000215 1.0e-12 77.4 86 52.3
CsaV3_4G008400 Cucumis sativus L. HOM05D000345 ORTHO05D000215 1.0e-12 77.4 86 52.3
GSVIVG01014236001 Vitis vinifera HOM05D000345 ORTHO05D000215 1.0e-12 77.4 71 64.8
Lsat_1_v5_gn_9_99020 Lactuca sativa HOM05D000345 ORTHO05D000215 1.4e-12 77.0 83 56.6
Nitab4.5_0003202g0050 Nicotiana tabacum HOM05D000345 ORTHO05D000215 1.4e-12 77.0 95 53.7
ClCG07G009950 Citrullus lanatus HOM05D000345 ORTHO05D000215 1.8e-12 76.6 84 52.4
Lsat_1_v5_gn_5_127021 Lactuca sativa HOM05D000345 ORTHO05D000215 1.8e-12 76.6 79 58.2
Sc16g0007400 Simmondsia chinensis HOM05D000345 ORTHO05D000215 3.0e-12 75.9 90 50.0
FvH4_3g18740 Fragaria vesca HOM05D000345 ORTHO05D000215 6.7e-12 74.7 78 53.8
FAN11G1302 Fragaria x ananassa HOM05D000345 ORTHO05D000215 6.7e-12 74.7 78 53.8
FAN16G3219 Fragaria x ananassa HOM05D000345 ORTHO05D000215 6.7e-12 74.7 78 53.8
PSO541G2023 Papaver somniferum HOM05D000345 ORTHO05D000215 6.7e-12 74.7 72 61.1
PSO675G7485 Papaver somniferum HOM05D000345 ORTHO05D000215 6.7e-12 74.7 72 61.1
SalBow7G3322 Salvia bowleyana HOM05D000345 ORTHO05D000215 8.8e-12 74.3 86 52.3
Cfa019602 Carpinus fangiana HOM05D000345 ORTHO05D000215 1.2e-11 73.9 86 55.8
CAN.G349.9 Capsicum annuum HOM05D000345 ORTHO05D000215 1.5e-11 73.6 83 54.2
Gohir.A04G037900 Gossypium hirsutum HOM05D000345 ORTHO05D000215 1.5e-11 73.6 86 51.2
FAN25G3709 Fragaria x ananassa HOM05D000345 ORTHO05D000215 2.0e-11 73.2 78 52.6
Potri.001G375800 Populus trichocarpa HOM05D000345 ORTHO05D000215 2.0e-11 73.2 76 56.6
SalBow2G0678 Salvia bowleyana HOM05D000345 ORTHO05D000215 2.0e-11 73.2 88 52.3
MSTRG.12881 Avicennia marina HOM05D000345 ORTHO05D000215 2.6e-11 72.8 89 50.6
Haze_09358 Corylus avellana HOM05D000345 ORTHO05D000215 2.6e-11 72.8 84 57.1
QL08p027336 Quercus lobata HOM05D000345 ORTHO05D000215 3.3e-11 72.4 89 50.6
HanXRQChr10g0304701 Helianthus annuus HOM05D000345 ORTHO05D000215 4.4e-11 72.0 84 54.8
Hma1.2p1_0416F.1_g148630 Hydrangea macrophylla HOM05D000345 ORTHO05D000215 4.4e-11 72.0 86 52.3
Ciclev10008390m.g Citrus clementina HOM05D000345 ORTHO05D000215 5.7e-11 71.6 80 53.8
Prupe.4G171100 Prunus persica HOM05D000345 ORTHO05D000215 5.7e-11 71.6 75 57.3
SHI21555 Sapria himalayana HOM05D000345 ORTHO05D000215 5.7e-11 71.6 75 60.0
Duzib170G0508 Durio zibethinus HOM05D000345 ORTHO05D000215 7.5e-11 71.2 88 50.0
Sabra16G0247700 Salix brachista HOM05D000345 ORTHO05D000215 7.5e-11 71.2 79 53.2
Sed0009838 Sechium edule HOM05D000345 ORTHO05D000215 7.5e-11 71.2 89 52.8
Duzib268G0183 Durio zibethinus HOM05D000345 ORTHO05D000215 9.7e-11 70.9 86 51.2
Sabra11G0090000 Salix brachista HOM05D000345 ORTHO05D000215 1.3e-10 70.5 110 40.0
FAN21G1184 Fragaria x ananassa HOM05D000345 ORTHO05D000215 1.7e-10 70.1 101 43.6
RcHm_v2.0_Chr5g0031541 Rosa chinensis HOM05D000345 ORTHO05D000215 1.7e-10 70.1 76 55.3
CiPaw.12G114900 Carya illinoinensis HOM05D000345 ORTHO05D000215 2.2e-10 69.7 83 59.0
Potri.011G096600 Populus trichocarpa HOM05D000345 ORTHO05D000215 2.2e-10 69.7 77 54.5
TWI39G0392 Tripterygium wilfordii HOM05D000345 ORTHO05D000215 2.2e-10 69.7 76 53.9
Thhalv10020786m.g Eutrema salsugineum HOM05D000345 ORTHO05D000215 2.8e-10 69.3 123 40.7
Duzib213G0620 Durio zibethinus HOM05D000345 ORTHO05D000215 3.7e-10 68.9 88 48.9
Gohir.A01G058800 Gossypium hirsutum HOM05D000345 ORTHO05D000215 3.7e-10 68.9 86 50.0
Gohir.D01G044900 Gossypium hirsutum HOM05D000345 ORTHO05D000215 3.7e-10 68.9 86 50.0
Gorai.002G064500 Gossypium raimondii HOM05D000345 ORTHO05D000215 3.7e-10 68.9 86 50.0
Manes.15G091000 Manihot esculenta HOM05D000345 ORTHO05D000215 3.7e-10 68.9 81 58.0
CANSAT35G1121 Cannabis sativa HOM05D000345 ORTHO05D000215 4.8e-10 68.6 71 54.9
COL.COLO4_02928 Corchorus olitorius HOM05D000345 ORTHO05D000215 4.8e-10 68.6 78 56.4
Thecc.07G103800 Theobroma cacao HOM05D000345 ORTHO05D000215 6.3e-10 68.2 86 48.8
Atru.chr2.2258 Acer truncatum HOM05D000345 ORTHO05D000215 8.2e-10 67.8 74 56.8
Gohir.D05G345000 Gossypium hirsutum HOM05D000345 ORTHO05D000215 8.2e-10 67.8 84 50.0
Gorai.009G373000 Gossypium raimondii HOM05D000345 ORTHO05D000215 8.2e-10 67.8 84 50.0
TWI38G1929 Tripterygium wilfordii HOM05D000345 ORTHO05D000215 8.2e-10 67.8 73 54.8
PGR083G2181 Punica granatum HOM05D000345 ORTHO05D000215 1.4e-09 67.0 93 46.2
Sed0011423 Sechium edule HOM05D000345 ORTHO05D000215 1.8e-09 66.6 78 51.3
TWI38G2373 Tripterygium wilfordii HOM05D000345 ORTHO05D000215 1.8e-09 66.6 72 54.2
Carub.0003s1467 Capsella rubella HOM05D000345 ORTHO05D000215 2.4e-09 66.2 99 44.4
Migut.H01974 Erythranthe guttata HOM05D000345 ORTHO05D000215 3.1e-09 65.9 74 55.4
Eucgr.F01204 Eucalyptus grandis HOM05D000345 ORTHO05D000215 3.1e-09 65.9 83 50.6
A03p39100 Brassica napus HOM05D000345 ORTHO05D000215 5.3e-09 65.1 89 47.2
BraA03t13059Z Brassica rapa HOM05D000345 ORTHO05D000215 5.3e-09 65.1 89 47.2
ECA234G3737 Erigeron canadensis HOM05D000345 ORTHO05D000215 5.3e-09 65.1 86 52.3
RcHm_v2.0_Chr2g0128901 Rosa chinensis HOM05D000345 ORTHO05D000215 9.1e-09 64.3 93 46.2
FvH4_6g27030 Fragaria vesca HOM05D000345 ORTHO05D000215 1.2e-08 63.9 93 45.2
FAN02G2344 Fragaria x ananassa HOM05D000345 ORTHO05D000215 1.2e-08 63.9 93 45.2
FAN05G0667 Fragaria x ananassa HOM05D000345 ORTHO05D000215 1.2e-08 63.9 93 45.2
FAN14G2058 Fragaria x ananassa HOM05D000345 ORTHO05D000215 1.2e-08 63.9 93 45.2
THA.LOC104798747 Tarenaya hassleriana HOM05D000345 ORTHO05D000215 1.2e-08 63.9 81 51.9
Os01g0213800 Oryza sativa ssp. japonica HOM05D000345 ORTHO05D000215 1.6e-08 63.5 77 57.1
BcaC01g03906 Brassica carinata HOM05D000345 ORTHO05D000215 2.0e-08 63.2 117 41.0
CiPaw.11G163700 Carya illinoinensis HOM05D000345 ORTHO05D000215 2.0e-08 63.2 76 55.3
DCAR_019587 Daucus carota HOM05D000345 ORTHO05D000215 2.0e-08 63.2 78 48.7
Gohir.A13G148300 Gossypium hirsutum HOM05D000345 ORTHO05D000215 2.0e-08 63.2 79 51.9
Gohir.D13G152900 Gossypium hirsutum HOM05D000345 ORTHO05D000215 2.0e-08 63.2 79 51.9
Gorai.013G172800 Gossypium raimondii HOM05D000345 ORTHO05D000215 2.0e-08 63.2 79 51.9
Oeu005393.1 Olea europaea HOM05D000345 ORTHO05D000215 2.0e-08 63.2 80 47.5
Prupe.3G124900 Prunus persica HOM05D000345 ORTHO05D000215 2.7e-08 62.8 106 41.5
TPR.G22528 Trifolium pratense HOM05D000345 ORTHO05D000215 2.7e-08 62.8 81 53.1
Phvul.011G156900 Phaseolus vulgaris HOM05D000345 ORTHO05D000215 3.5e-08 62.4 95 45.3
Psat4g170920 Pisum sativum HOM05D000345 ORTHO05D000215 3.5e-08 62.4 81 50.6
Sopen07g030910 Solanum pennellii HOM05D000345 ORTHO05D000215 3.5e-08 62.4 62 61.3
Sopen12g005920 Solanum pennellii HOM05D000345 ORTHO05D000215 3.5e-08 62.4 69 53.6
AT3G15030 Arabidopsis thaliana HOM05D000345 ORTHO05D000215 4.5e-08 62.0 83 49.4
CARHR089990 Cardamine hirsuta HOM05D000345 ORTHO05D000215 4.5e-08 62.0 91 46.2
ClCG11G017590 Citrullus lanatus HOM05D000345 ORTHO05D000215 4.5e-08 62.0 115 38.3
Potri.013G119400 Populus trichocarpa HOM05D000345 ORTHO05D000215 4.5e-08 62.0 95 42.1
AL3G27370 Arabidopsis lyrata HOM05D000345 ORTHO05D000215 7.7e-08 61.2 90 47.8
Sabra13G0100800 Salix brachista HOM05D000345 ORTHO05D000215 1.3e-07 60.5 95 42.1
HPP92_020028 Vanilla planifolia HOM05D000345 ORTHO05D000215 1.3e-07 60.5 71 54.9
FAN09G2288 Fragaria x ananassa HOM05D000345 ORTHO05D000215 2.2e-07 59.7 93 43.0
Medtr8g463380 Medicago truncatula HOM05D000345 ORTHO05D000215 2.2e-07 59.7 80 48.8
Glyma.06G232300 Glycine max HOM05D000345 ORTHO05D000215 2.9e-07 59.3 93 45.2
VMungo1127G1813 Vigna mungo HOM05D000345 ORTHO05D000215 2.9e-07 59.3 99 44.4
Solyc12g014140.3 Solanum lycopersicum HOM05D000345 ORTHO05D000215 3.8e-07 58.9 83 48.2
MELO3C025629.2 Cucumis melo HOM05D000345 ORTHO05D000215 6.5e-07 58.2 95 42.1
CsaV3_4G033270 Cucumis sativus L. HOM05D000345 ORTHO05D000215 8.5e-07 57.8 95 43.2
Glyma.12G158900 Glycine max HOM05D000345 ORTHO05D000215 1.1e-06 57.4 101 43.6
BcaB06g29530 Brassica carinata HOM05D000345 ORTHO05D000215 1.5e-06 57.0 93 41.9
C05p52170 Brassica napus HOM05D000345 ORTHO05D000215 1.5e-06 57.0 93 41.9
BolC5t33901H Brassica oleracea HOM05D000345 ORTHO05D000215 1.5e-06 57.0 93 41.9
Aa31LG10G1920 Aethionema arabicum HOM05D000345 ORTHO05D000215 2.5e-06 56.2 81 50.6
THA.LOC104810598 Tarenaya hassleriana HOM05D000345 ORTHO05D000215 2.5e-06 56.2 77 45.5
Thecc.01G242600 Theobroma cacao HOM05D000345 ORTHO05D000215 2.5e-06 56.2 81 45.7
TWI23G0182 Tripterygium wilfordii HOM05D000345 ORTHO05D000215 2.5e-06 56.2 80 45.0
Aa31LG8G2240 Aethionema arabicum HOM05D000345 ORTHO05D000215 4.2e-06 55.5 111 39.6
MD17G1233500 Malus domestica HOM05D000345 ORTHO05D000215 4.2e-06 55.5 82 43.9
Lalb_Chr01g0006701 Lupinus albus HOM05D000345 ORTHO05D000215 5.5e-06 55.1 74 45.9
SGA_v2.0_scaffold130G34330 Striga asiatica HOM05D000345 ORTHO05D000215 5.5e-06 55.1 89 39.3
Glyma.13G271700 Glycine max HOM05D000345 ORTHO05D000215 7.2e-06 54.7 76 48.7
MD09G1232700 Malus domestica HOM05D000345 ORTHO05D000215 7.2e-06 54.7 74 48.6
C03p47380 Brassica napus HOM05D000345 ORTHO05D000215 9.4e-06 54.3 97 42.3
BolC3t17008H Brassica oleracea HOM05D000345 ORTHO05D000215 9.4e-06 54.3 97 42.3
Sp3g13230 Schrenkiella parvula HOM05D000345 ORTHO05D000215 9.4e-06 54.3 100 40.0


User provided reference genes

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