Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.2e-107 393.3 211 100.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.7e-61 240.0 205 62.0
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.6e-56 223.4 210 58.1
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.5e-54 216.9 212 58.0
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 5.8e-54 214.9 168 66.1
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 7.1e-52 208.0 125 77.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.7e-51 206.1 122 79.5
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.5e-51 205.7 122 77.9
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.0e-50 204.1 125 77.6
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.3e-50 203.8 216 56.0
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.8e-50 203.4 125 76.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.8e-50 203.4 122 80.3
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.8e-50 203.4 122 80.3
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 3.0e-50 202.6 125 77.6
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.0e-50 202.6 122 79.5
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.0e-50 202.6 122 79.5
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 3.9e-50 202.2 208 55.3
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.7e-50 201.4 118 78.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 6.7e-50 201.4 125 76.8
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.7e-50 201.1 125 76.8
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 8.7e-50 201.1 122 79.5
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.1e-49 200.7 187 58.3
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.9e-49 199.9 122 77.9
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.5e-49 199.5 118 78.8
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.5e-49 199.5 122 77.9
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.5e-49 199.5 118 81.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 2.5e-49 199.5 126 75.4
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 4.3e-49 198.7 125 75.2
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 5.7e-49 198.4 189 58.2
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 5.7e-49 198.4 122 75.4
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-49 198.4 122 75.4
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-49 198.4 122 75.4
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-49 198.4 122 75.4
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-49 198.4 122 75.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 7.4e-49 198.0 201 54.7
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 7.4e-49 198.0 118 78.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 9.6e-49 197.6 118 78.8
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 9.6e-49 197.6 165 61.2
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 9.6e-49 197.6 125 73.6
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 9.6e-49 197.6 125 73.6
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 9.6e-49 197.6 198 55.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.3e-48 197.2 201 54.2
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.3e-48 197.2 189 56.1
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.3e-48 197.2 128 75.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-48 196.8 122 74.6
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.6e-48 196.8 125 73.6
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.6e-48 196.8 118 78.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.6e-48 196.8 122 74.6
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.1e-48 196.4 118 78.0
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.1e-48 196.4 211 55.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 2.8e-48 196.1 125 72.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 3.7e-48 195.7 117 76.1
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 3.7e-48 195.7 119 76.5
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 3.7e-48 195.7 118 78.0
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.8e-48 195.3 118 78.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 4.8e-48 195.3 208 52.9
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 4.8e-48 195.3 118 78.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 6.2e-48 194.9 118 77.1
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 6.2e-48 194.9 117 78.6
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 8.2e-48 194.5 210 52.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-47 194.1 119 77.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.1e-47 194.1 125 73.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-47 194.1 208 51.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.1e-47 194.1 118 77.1
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.1e-47 194.1 125 73.6
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.4e-47 193.7 125 72.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.4e-47 193.7 118 77.1
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.4e-47 193.7 197 53.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.4e-47 193.7 118 77.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.4e-47 193.7 125 72.8
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.8e-47 193.4 118 77.1
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-47 193.4 204 53.4
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-47 193.4 204 53.4
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.8e-47 193.4 204 53.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.8e-47 193.4 204 53.4
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.8e-47 193.4 118 78.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.4e-47 193.0 117 77.8
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.1e-47 192.6 118 76.3
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.1e-47 192.6 204 52.9
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 3.1e-47 192.6 209 53.1
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 3.1e-47 192.6 118 77.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 3.1e-47 192.6 118 76.3
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.1e-47 192.6 118 76.3
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.1e-47 192.2 207 53.1
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.1e-47 192.2 219 51.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 5.3e-47 191.8 209 53.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 9.0e-47 191.0 207 52.2
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 9.0e-47 191.0 214 51.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 9.0e-47 191.0 125 72.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 9.0e-47 191.0 117 76.1
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.2e-46 190.7 125 72.0
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.2e-46 190.7 208 51.4
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.2e-46 190.7 191 55.5
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.2e-46 190.7 125 71.2
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.5e-46 190.3 214 51.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 2.0e-46 189.9 120 73.3
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.0e-46 189.9 210 51.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.6e-46 189.5 119 73.9
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.6e-46 189.5 127 71.7
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.8e-46 188.3 119 72.3
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.8e-46 188.3 118 73.7
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 7.6e-46 188.0 125 69.6
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 7.6e-46 188.0 205 51.7
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 7.6e-46 188.0 125 69.6
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.3e-45 187.2 117 72.6
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.9e-45 186.0 118 72.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.4e-44 183.7 187 53.5
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.4e-44 183.7 187 53.5
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.2e-44 182.2 109 77.1
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.2e-44 182.2 109 77.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.2e-44 182.2 109 77.1
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 6.1e-43 178.3 193 52.8
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 7.9e-43 177.9 118 70.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.8e-42 176.8 118 69.5
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.9e-42 175.6 113 73.5
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 5.7e-41 171.8 132 65.9
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.7e-41 171.0 125 68.0
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.8e-40 169.5 122 68.0
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 3.7e-40 169.1 259 42.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 4.1e-39 165.6 100 79.0
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 9.0e-39 164.5 121 67.8
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.2e-38 164.1 118 66.1
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.0e-38 163.3 119 66.4
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 5.0e-37 158.7 226 43.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.5e-36 156.4 127 61.4
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.4e-34 150.6 122 61.5
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.9e-34 149.1 94 76.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.8e-32 142.9 108 60.2
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 8.2e-32 141.4 115 56.5
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.3e-31 138.7 106 58.5
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.0e-30 136.7 106 57.5
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 4.5e-30 135.6 106 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 6.5e-29 131.7 106 56.6
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 4.2e-28 129.0 79 74.7
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 7.2e-28 128.3 94 61.7
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.6e-27 127.1 79 75.9
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 9.7e-25 117.9 79 69.6
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.3e-24 115.2 66 83.3
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.3e-24 115.2 66 83.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 8.2e-24 114.8 144 47.2
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.3e-16 90.9 62 69.4
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 3.8e-13 79.3 50 70.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.1e-11 73.6 49 67.3
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 6.8e-10 68.6 63 57.1
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.7e-06 56.6 37 67.6


User provided reference genes

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