Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.0e-172 609.0 301 100.0
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.1e-161 572.4 341 86.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.0e-132 476.1 311 76.5
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 3.9e-128 461.8 310 76.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.1e-125 452.2 311 74.3
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 6.9e-117 424.5 315 70.8
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 4.3e-111 405.2 244 80.3
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.3e-111 405.2 244 80.3
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 2.8e-110 402.5 292 70.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 6.3e-110 401.4 272 73.9
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.4e-109 400.2 257 76.3
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.4e-109 400.2 282 73.0
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-109 399.8 211 96.2
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.4e-109 399.4 334 66.2
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.1e-109 398.7 290 70.0
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 4.1e-109 398.7 240 80.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 5.3e-109 398.3 289 69.9
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 6.9e-109 397.9 272 73.2
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 6.9e-109 397.9 246 79.7
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-108 396.7 292 69.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.0e-108 396.4 247 78.1
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.6e-108 396.0 267 74.9
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.6e-108 396.0 250 77.2
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.4e-108 395.6 277 71.8
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 4.5e-108 395.2 284 71.5
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.9e-108 394.8 246 77.6
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 7.7e-108 394.4 253 76.7
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.0e-107 394.0 301 68.8
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.0e-107 394.0 292 69.5
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.7e-107 393.3 244 79.5
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.7e-107 393.3 280 72.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.2e-107 392.9 281 70.5
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.8e-107 392.1 263 73.4
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-106 390.6 292 68.8
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.1e-106 390.6 262 72.9
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.9e-106 389.8 297 68.0
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.9e-106 389.8 290 68.3
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.5e-106 389.4 297 66.3
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.2e-106 387.9 286 70.3
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.2e-106 387.9 286 70.3
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.6e-105 386.7 286 69.9
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.6e-105 386.7 245 77.1
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 3.6e-105 385.6 262 74.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.1e-105 384.8 284 68.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 6.1e-105 384.8 246 76.4
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 6.1e-105 384.8 269 72.1
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 7.9e-105 384.4 250 75.2
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 7.9e-105 384.4 300 66.7
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.0e-104 384.0 280 69.6
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.0e-104 384.0 246 77.6
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.8e-104 383.3 284 68.3
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.8e-104 383.3 248 75.8
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.3e-104 382.9 248 76.2
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 5.1e-104 381.7 246 75.6
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 5.1e-104 381.7 310 62.9
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 6.7e-104 381.3 248 75.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 8.8e-104 380.9 251 73.3
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-103 380.2 248 74.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.5e-103 380.2 248 73.4
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.5e-103 380.2 273 71.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.5e-103 380.2 294 66.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.6e-103 379.4 242 77.3
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.6e-103 379.4 272 70.6
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.3e-103 379.0 261 73.6
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 5.7e-103 378.3 248 74.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 7.4e-103 377.9 303 68.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 9.7e-103 377.5 248 73.8
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 9.7e-103 377.5 251 74.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.8e-102 375.9 277 69.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.7e-102 375.6 259 72.2
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.8e-102 375.2 252 71.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 8.2e-102 374.4 250 70.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.4e-101 373.6 251 70.5
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.4e-101 373.6 302 65.2
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.8e-101 373.2 266 69.9
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.4e-101 372.9 250 70.0
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.1e-101 372.5 248 73.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 3.1e-101 372.5 242 76.0
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 3.1e-101 372.5 245 75.5
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.0e-100 369.8 253 73.1
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.2e-99 366.3 243 72.0
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 5.0e-99 365.2 287 66.2
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 5.0e-99 365.2 296 62.2
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 8.5e-99 364.4 254 70.9
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.4e-98 363.6 274 65.7
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.9e-98 363.2 272 66.5
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 3.2e-98 362.5 243 71.6
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 7.2e-98 361.3 262 69.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 7.2e-98 361.3 263 70.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.6e-97 360.1 298 62.1
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.7e-97 359.4 273 67.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 8.0e-97 357.8 245 70.6
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.8e-96 356.7 244 70.5
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.3e-96 356.3 260 70.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.1e-95 354.0 245 70.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.0e-95 353.2 340 56.5
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.8e-94 349.4 265 67.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.6e-92 342.8 277 61.7
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 7.7e-92 341.3 212 80.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.3e-91 340.5 296 59.1
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.7e-89 332.8 301 58.1
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 8.8e-88 327.8 422 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.1e-85 320.9 253 59.7
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.1e-85 319.3 215 70.2
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 3.5e-84 315.8 266 63.2
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 4.5e-84 315.5 249 64.7
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.2e-83 313.2 246 66.3
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.9e-83 312.8 247 65.6
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.8e-80 303.5 246 58.1
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.2e-78 296.6 253 60.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.6e-71 273.1 234 61.5
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 4.5e-68 262.3 225 61.8
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 7.8e-68 261.5 216 58.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 4.7e-65 252.3 224 61.2
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 4.4e-63 245.7 246 49.2
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 7.5e-63 245.0 242 48.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.3e-62 244.2 167 74.3
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 5.0e-59 232.3 251 49.8
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 3.3e-58 229.6 159 74.2
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.8e-56 223.8 179 64.8
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 8.9e-56 221.5 167 67.1
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 5.8e-55 218.8 131 80.9
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 4.1e-53 212.6 235 41.3
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.3e-51 206.8 127 78.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.6e-51 204.9 127 77.2
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.1e-50 204.5 206 56.8
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.1e-50 204.5 132 75.8
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.1e-48 198.0 184 58.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 5.2e-48 195.7 130 70.8
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.4e-47 193.0 140 65.0
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.7e-46 190.7 112 78.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 9.2e-45 184.9 112 75.9
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 9.2e-45 184.9 238 43.3
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 7.8e-44 181.8 114 72.8
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.3e-43 180.3 101 81.2
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.8e-40 170.6 245 38.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.4e-39 166.0 221 44.8
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-37 161.0 92 81.5
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-37 160.6 82 87.8
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-36 157.5 125 65.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 4.6e-36 156.0 122 66.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 4.6e-36 156.0 122 66.4
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 6.0e-36 155.6 146 53.4
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.3e-34 149.8 89 76.4
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.1e-33 147.1 80 83.8
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 4.7e-33 146.0 225 38.2
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.5e-31 141.0 242 36.4
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 2.6e-31 140.2 74 81.1
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-29 134.0 76 77.6
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.6e-28 131.0 74 77.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.1e-28 130.6 69 85.5
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.1e-24 116.7 56 89.3
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 5.3e-24 115.9 237 32.5
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.6e-23 113.6 63 81.0
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.8e-23 112.5 82 67.1
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 7.6e-23 112.1 114 56.1
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.9e-21 107.5 97 58.8
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-18 98.2 59 78.0
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.2e-15 88.2 146 35.6
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.2e-15 88.2 48 81.2
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.0e-15 87.4 47 78.7
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.7e-14 84.3 59 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 5.6e-10 69.3 102 37.3
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 2.2e-06 57.4 74 43.2


User provided reference genes

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