Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 7.0e-116 420.6 211 100.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 9.8e-110 400.2 211 96.2
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 7.8e-107 390.6 248 83.1
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.9e-97 359.4 215 82.8
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 7.3e-97 357.5 216 83.3
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.1e-96 355.9 216 82.4
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 4.7e-96 354.8 216 82.4
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.6e-94 349.0 215 80.5
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.6e-94 349.0 215 80.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 3.7e-93 345.1 212 80.7
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 3.7e-93 345.1 216 79.6
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.9e-92 342.8 212 80.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.4e-92 341.3 216 77.3
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.4e-92 341.3 216 78.7
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 9.2e-92 340.5 216 78.2
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 9.2e-92 340.5 215 78.1
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.2e-91 340.1 216 78.2
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.2e-91 340.1 216 79.2
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.6e-91 339.7 214 79.9
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.6e-91 339.7 216 77.3
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.1e-91 339.3 215 77.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.1e-91 339.3 212 80.7
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.7e-91 339.0 216 78.2
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 4.6e-91 338.2 216 76.9
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 6.0e-91 337.8 212 79.7
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 7.8e-91 337.4 212 79.7
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 7.8e-91 337.4 216 79.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 7.8e-91 337.4 212 79.2
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.3e-90 336.7 215 77.2
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.3e-90 335.9 213 77.5
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.0e-90 335.5 212 79.2
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.0e-90 335.5 212 79.2
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.0e-90 335.5 212 78.3
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.0e-90 335.5 212 78.3
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 6.6e-90 334.3 212 79.2
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 6.6e-90 334.3 215 76.7
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.6e-90 334.0 212 77.8
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 8.6e-90 334.0 214 77.1
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 8.6e-90 334.0 215 77.7
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 8.6e-90 334.0 214 77.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.5e-89 333.2 215 76.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.9e-89 332.8 216 76.4
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.9e-89 332.8 216 77.3
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 5.6e-89 331.3 212 77.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 5.6e-89 331.3 216 74.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 9.5e-89 330.5 212 78.3
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.2e-88 330.1 215 74.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.1e-88 329.3 213 75.6
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.1e-88 329.3 215 74.9
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.1e-88 329.3 216 76.9
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.6e-88 328.6 212 76.9
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.6e-88 328.6 214 77.6
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.7e-88 328.2 216 75.9
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.1e-87 327.0 216 75.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.1e-87 327.0 212 77.8
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.8e-87 326.2 248 69.0
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.3e-87 325.9 214 75.2
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 4.0e-87 325.1 215 73.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.0e-87 325.1 215 73.5
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 4.0e-87 325.1 214 76.2
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 5.2e-87 324.7 213 76.5
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 5.2e-87 324.7 212 75.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 5.2e-87 324.7 212 76.4
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 5.2e-87 324.7 214 75.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 6.8e-87 324.3 212 74.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-86 323.6 212 75.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.5e-86 323.2 214 75.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.0e-86 322.8 212 75.0
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.0e-86 322.8 215 72.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.4e-86 322.0 215 71.2
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.4e-86 322.0 213 74.6
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.6e-86 320.9 212 75.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.7e-85 319.7 213 74.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.7e-85 319.7 231 71.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 2.2e-85 319.3 212 75.5
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.9e-85 318.9 215 70.7
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 6.4e-85 317.8 215 74.4
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.1e-84 317.0 230 70.0
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.4e-84 316.6 212 74.5
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.4e-84 316.6 214 74.8
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 3.2e-84 315.5 213 72.8
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 4.1e-84 315.1 199 78.4
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.5e-83 312.0 216 69.4
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.0e-83 311.2 215 72.1
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.3e-82 310.1 215 72.1
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.3e-82 309.3 214 70.1
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.0e-82 308.9 215 71.6
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 6.6e-82 307.8 210 71.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 8.6e-82 307.4 214 69.6
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.5e-81 305.8 212 73.1
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.5e-81 305.8 214 69.2
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.6e-81 304.7 212 71.7
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 7.3e-81 304.3 216 69.9
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 7.3e-81 304.3 216 69.9
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-79 300.4 194 77.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.1e-79 300.4 216 69.4
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 6.8e-79 297.7 310 53.5
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 8.9e-79 297.4 207 71.0
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 4.4e-78 295.0 237 64.1
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 9.3e-76 287.3 209 68.9
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 9.3e-76 287.3 246 59.3
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.6e-75 286.6 215 67.0
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.5e-75 285.4 304 53.3
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 6.0e-75 284.6 237 63.3
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 5.4e-68 261.5 212 66.0
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 9.3e-68 260.8 184 71.7
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.2e-67 260.4 210 59.5
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 6.0e-67 258.1 216 58.8
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 3.0e-66 255.8 215 57.7
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-63 247.3 183 67.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.1e-63 245.7 167 74.9
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 6.4e-61 238.0 194 64.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.6e-59 233.4 212 60.8
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 2.1e-59 233.0 159 75.5
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 5.6e-57 224.9 180 65.6
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 4.8e-56 221.9 133 81.2
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 6.2e-56 221.5 168 67.3
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 8.4e-53 211.1 154 68.8
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.4e-52 210.3 131 77.9
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.9e-52 209.9 213 60.1
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 5.5e-52 208.4 216 49.5
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.1e-52 208.0 129 77.5
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.6e-51 206.8 213 48.4
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.0e-51 204.9 154 68.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 8.7e-50 201.1 226 49.6
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.1e-49 200.7 206 56.8
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 9.6e-49 197.6 130 71.5
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.2e-45 186.4 112 76.8
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.1e-43 179.9 114 71.9
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 7.9e-43 177.9 204 43.1
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 2.2e-40 169.9 175 55.4
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.8e-37 159.1 92 80.4
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 8.5e-37 157.9 124 66.1
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 8.5e-37 157.9 124 66.1
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-36 157.1 131 62.6
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.6e-35 152.5 216 40.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 5.1e-34 148.7 80 85.0
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 4.5e-30 135.6 76 78.9
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 5.9e-30 135.2 203 38.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.0e-29 132.1 208 36.1
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 8.5e-29 131.3 70 85.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.1e-28 131.0 69 85.5
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.5e-28 129.8 72 80.6
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.6e-27 127.1 134 53.0
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 7.9e-27 124.8 70 82.9
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.0e-26 124.4 98 67.3
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 5.7e-25 118.6 70 77.1
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.8e-23 113.6 63 81.0
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 3.8e-21 105.9 66 68.2
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 2.1e-19 100.1 55 81.8
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 8.0e-19 98.2 206 34.0
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 8.0e-19 98.2 80 55.0
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-17 94.4 59 74.6
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 9.1e-15 84.7 44 81.8
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.2e-14 84.3 59 59.3
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.5e-14 82.8 44 81.8
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 5.9e-14 82.0 47 78.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 3.2e-12 76.3 44 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 4.0e-10 69.3 102 37.3
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.7e-06 55.1 102 34.3


User provided reference genes

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