Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 4.0e-187 657.9 324 100.0
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 2.7e-151 538.9 281 96.4
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 1.1e-133 480.3 280 84.6
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 1.7e-132 476.5 281 82.2
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 9.4e-128 460.7 283 77.4
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 9.4e-128 460.7 280 80.0
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 8.8e-126 454.1 280 79.3
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 3.3e-125 452.2 280 75.4
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 7.4e-125 451.1 280 75.7
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.7e-124 449.9 280 77.9
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 8.2e-124 447.6 279 74.6
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.4e-123 446.8 280 74.3
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.8e-123 446.4 280 77.5
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 3.1e-123 445.7 283 74.9
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 2.0e-122 443.0 280 74.3
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.6e-122 442.6 282 74.5
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.3e-121 440.3 283 74.6
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.3e-121 440.3 283 74.9
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 2.2e-121 439.5 280 75.0
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 5.0e-121 438.3 278 75.5
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 4.2e-120 435.3 283 73.5
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 5.5e-120 434.9 280 74.3
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 5.5e-120 434.9 282 74.1
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 7.2e-120 434.5 283 72.8
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.2e-119 433.7 283 72.8
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.6e-119 433.3 280 75.0
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.1e-119 433.0 283 73.1
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 2.7e-119 432.6 280 73.6
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 6.1e-119 431.4 280 74.3
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 1.0e-118 430.6 283 74.6
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.4e-118 430.3 283 74.2
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.3e-118 429.5 280 74.3
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.9e-118 428.7 312 68.9
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 5.2e-118 428.3 280 73.6
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 6.7e-118 427.9 281 72.6
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 6.7e-118 427.9 281 73.3
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.1e-117 427.2 280 73.6
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.1e-117 427.2 280 73.6
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 1.1e-117 427.2 283 72.8
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.5e-117 426.8 283 72.4
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 2.6e-117 426.0 280 73.9
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 4.4e-117 425.2 280 73.6
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 5.7e-117 424.9 280 72.5
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 9.7e-117 424.1 283 73.5
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.3e-116 423.7 283 73.5
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.3e-116 423.7 283 73.1
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 1.3e-116 423.7 283 71.7
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 2.8e-116 422.5 280 72.1
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.7e-116 422.2 265 77.4
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 4.8e-116 421.8 283 71.4
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 8.2e-116 421.0 280 71.4
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 8.2e-116 421.0 283 70.7
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.4e-115 420.2 281 72.2
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 1.4e-115 420.2 283 71.0
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.8e-115 419.9 280 71.8
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 4.1e-115 418.7 285 72.6
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 5.3e-115 418.3 280 71.1
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 9.1e-115 417.5 283 71.4
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.2e-114 417.2 280 73.9
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.0e-114 416.4 281 71.9
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.5e-114 415.6 283 70.3
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 3.5e-114 415.6 281 69.8
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.9e-114 414.8 280 72.5
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 5.9e-114 414.8 280 69.6
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.9e-114 414.8 280 72.1
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 5.9e-114 414.8 280 73.2
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 7.7e-114 414.5 281 73.3
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.0e-113 414.1 279 72.8
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.0e-113 414.1 279 72.4
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 3.8e-113 412.1 280 69.6
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 5.0e-113 411.8 280 71.1
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 6.5e-113 411.4 285 70.9
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 8.5e-113 411.0 280 71.1
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.9e-112 409.8 287 70.7
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 3.2e-112 409.1 282 70.9
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 7.2e-112 407.9 281 70.8
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.7e-111 406.0 283 70.7
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 3.6e-111 405.6 280 70.0
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 4.7e-111 405.2 280 71.4
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 2.6e-109 399.4 263 73.0
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 7.5e-109 397.9 281 68.3
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 6.3e-108 394.8 280 67.5
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 1.6e-106 390.2 234 81.6
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 2.0e-106 389.8 278 66.5
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 3.5e-106 389.0 279 68.5
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.9e-105 386.0 280 68.9
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.9e-105 386.0 277 65.3
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 5.0e-105 385.2 280 68.6
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 6.5e-105 384.8 317 60.9
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 8.5e-105 384.4 259 70.7
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 4.2e-104 382.1 280 65.4
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 7.2e-104 381.3 278 65.8
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 7.2e-104 381.3 279 67.7
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 3.6e-103 379.0 280 67.9
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 6.1e-103 378.3 280 66.4
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 8.0e-103 377.9 279 66.7
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 8.0e-103 377.9 280 66.4
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 6.8e-102 374.8 277 65.3
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.6e-101 372.9 280 63.9
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 1.3e-100 370.5 275 65.5
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 4.8e-100 368.6 280 64.6
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 5.0e-97 358.6 280 62.9
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 7.2e-96 354.8 286 61.2
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 9.5e-96 354.4 278 59.7
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 1.6e-95 353.6 280 61.8
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 2.1e-95 353.2 234 72.6
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 2.8e-95 352.8 280 62.1
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 2.8e-95 352.8 263 65.4
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 3.6e-95 352.4 280 62.5
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 2.3e-94 349.7 280 61.8
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 4.0e-94 349.0 280 61.8
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 4.0e-94 349.0 280 61.8
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 5.2e-94 348.6 252 67.9
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.8e-94 348.2 278 58.6
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 6.8e-94 348.2 230 73.9
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 8.9e-94 347.8 272 64.0
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.5e-93 347.1 280 61.8
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 5.7e-93 345.1 280 61.1
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 7.8e-90 334.7 281 61.2
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 3.9e-89 332.4 281 60.5
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 6.6e-89 331.6 286 56.6
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 2.0e-85 320.1 325 53.8
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 2.0e-85 320.1 308 55.8
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 2.0e-85 320.1 277 56.7
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 7.5e-85 318.2 308 55.2
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 7.5e-85 318.2 318 58.2
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 2.2e-84 316.6 275 55.3
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 1.0e-81 307.8 236 60.2
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 1.3e-81 307.4 296 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 4.7e-79 298.9 285 53.0
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.7e-76 290.4 277 54.5
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.7e-76 290.4 275 52.4
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 6.4e-76 288.5 294 52.7
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 2.4e-75 286.6 281 54.8
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 4.1e-75 285.8 199 67.8
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.5e-72 277.3 280 53.6
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.3e-72 275.8 164 79.3
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.1e-70 271.2 308 46.1
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 8.4e-60 235.0 168 69.0
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.1e-59 234.6 169 67.5
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 3.5e-58 229.6 140 77.1
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.3e-57 226.9 206 55.3
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.3e-57 226.9 206 55.3
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.1e-46 191.4 112 79.5
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.2e-44 183.7 147 62.6
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.9e-40 170.6 112 73.2
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 4.8e-39 166.0 119 68.1
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 1.0e-33 148.3 300 31.7
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 2.5e-32 143.7 288 35.1
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 3.1e-30 136.7 163 46.6
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.4e-29 133.3 127 52.0
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 1.1e-24 118.2 85 68.2
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 1.8e-22 110.9 282 29.8
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.0e-20 105.1 177 38.4
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 5.5e-19 99.4 281 29.2
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 5.5e-19 99.4 342 29.8
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 1.1e-14 85.1 105 41.9
SGA_v2.0_scaffold60G20793 Striga asiatica HOM05D004652 ORTHO05D401540 1.1e-06 58.5 32 84.4


User provided reference genes

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