Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 3.4e-199 698.4 413 100.0
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.6e-132 476.9 398 71.9
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.2e-105 386.7 414 60.1
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.2e-90 337.8 465 52.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 8.4e-89 331.6 369 61.2
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.1e-88 331.3 273 65.2
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.9e-88 330.5 401 52.9
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 9.3e-88 328.2 421 55.6
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.2e-87 327.8 273 65.2
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.1e-87 327.0 368 57.3
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.1e-87 327.0 277 64.6
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 7.8e-87 325.1 418 52.2
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 3.9e-86 322.8 401 53.1
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 6.6e-86 322.0 353 57.2
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.1e-85 321.2 445 50.3
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.1e-85 321.2 305 61.0
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.9e-85 320.5 416 51.2
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.5e-85 320.1 389 53.7
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 4.3e-85 319.3 412 51.0
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 9.6e-85 318.2 427 51.8
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 9.6e-85 318.2 290 59.0
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 2.1e-84 317.0 229 69.0
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.1e-84 317.0 419 50.1
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.1e-84 317.0 409 50.9
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 2.8e-84 316.6 443 50.3
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.8e-84 316.6 383 53.3
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 4.8e-84 315.8 440 49.8
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 6.2e-84 315.5 413 48.9
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 3.1e-83 313.2 319 59.6
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 5.3e-83 312.4 407 52.3
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 5.3e-83 312.4 288 63.9
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 9.0e-83 311.6 440 52.3
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 2.0e-82 310.5 299 61.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 2.0e-82 310.5 238 66.0
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.0e-82 310.5 236 67.8
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 3.4e-82 309.7 422 50.9
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 3.4e-82 309.7 233 67.8
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 4.5e-82 309.3 222 68.9
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 5.8e-82 308.9 429 50.1
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 5.8e-82 308.9 433 51.7
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 7.6e-82 308.5 410 53.2
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 9.9e-82 308.1 222 68.5
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 9.9e-82 308.1 409 48.7
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 9.9e-82 308.1 391 50.4
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.3e-81 307.8 391 53.5
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 1.7e-81 307.4 426 52.3
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 2.2e-81 307.0 222 68.0
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 2.2e-81 307.0 240 65.4
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 2.2e-81 307.0 240 65.4
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.2e-81 307.0 221 69.7
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.9e-81 306.6 420 45.5
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.9e-81 306.6 428 49.8
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 2.9e-81 306.6 353 54.1
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.9e-81 306.6 454 49.3
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.8e-81 306.2 378 54.2
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.8e-81 306.2 383 54.6
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.8e-81 306.2 227 68.7
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.9e-81 305.8 397 49.9
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.9e-81 305.8 367 53.4
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 6.4e-81 305.4 416 49.5
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 6.4e-81 305.4 221 71.5
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.4e-80 304.3 316 57.0
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.9e-80 303.9 231 65.4
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 3.2e-80 303.1 215 71.2
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 4.2e-80 302.8 222 66.7
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 4.2e-80 302.8 388 52.3
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 9.3e-80 301.6 394 56.3
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 9.3e-80 301.6 369 57.2
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 9.3e-80 301.6 221 68.8
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.2e-79 301.2 314 55.4
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 2.1e-79 300.4 357 56.3
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.7e-79 300.1 349 53.9
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.7e-79 300.1 413 51.3
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 4.6e-79 299.3 232 65.1
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 6.0e-79 298.9 345 53.9
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 7.9e-79 298.5 232 65.1
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 7.9e-79 298.5 365 53.2
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 7.9e-79 298.5 345 54.5
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 1.3e-78 297.7 355 56.3
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 1.3e-78 297.7 223 66.8
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 1.3e-78 297.7 223 66.8
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.3e-78 297.7 372 51.9
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.3e-78 297.7 454 50.7
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 3.9e-78 296.2 336 55.4
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.9e-78 296.2 290 62.1
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 6.6e-78 295.4 365 49.3
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.1e-77 294.7 371 48.8
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.9e-77 293.9 223 66.4
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.5e-77 293.5 428 46.7
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 3.3e-77 293.1 408 48.3
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 5.6e-77 292.4 410 46.3
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 7.4e-77 292.0 415 47.5
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 9.6e-77 291.6 372 48.9
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 9.6e-77 291.6 431 48.5
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 3.6e-76 289.7 342 51.8
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.6e-76 289.7 296 56.1
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 6.2e-76 288.9 438 46.6
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 1.4e-75 287.7 277 56.0
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 2.4e-75 287.0 225 65.3
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.1e-75 286.6 308 55.2
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 4.0e-75 286.2 345 50.1
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 6.9e-75 285.4 191 78.0
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.9e-73 280.0 322 55.3
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 6.4e-73 278.9 298 56.4
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.9e-72 277.3 378 54.2
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.9e-72 277.3 412 49.3
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 3.2e-72 276.6 211 64.5
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.6e-71 274.2 437 49.9
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 4.6e-71 272.7 226 64.6
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 4.6e-71 272.7 221 61.1
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 5.1e-70 269.2 205 64.9
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.5e-69 267.7 208 64.4
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 9.6e-69 265.0 301 51.8
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.1e-68 263.8 417 46.3
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 3.2e-64 250.0 437 43.0
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 5.5e-64 249.2 356 50.3
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 4.6e-63 246.1 457 43.5
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 6.9e-59 232.3 221 54.8
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.9e-48 197.6 285 42.1
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.7e-41 174.5 217 45.2
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.9e-40 171.0 217 44.7
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 6.1e-39 166.0 237 38.0
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 3.9e-38 163.3 215 39.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.5e-33 146.0 311 35.7
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 8.5e-33 145.6 92 80.4
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 4.2e-32 143.3 224 38.8
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 8.8e-30 135.6 237 35.0
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.4e-29 133.3 150 46.7
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 8.2e-28 129.0 251 45.0
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 7.0e-27 125.9 195 39.0
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.2e-26 125.2 200 39.0
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 5.0e-25 119.8 238 31.1
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.1e-23 114.4 197 31.5
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 3.6e-23 113.6 205 36.1
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 2.3e-22 110.9 225 33.8
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 2.0e-21 107.8 67 71.6
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 4.4e-21 106.7 137 44.5
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 9.1e-19 99.0 193 35.2
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 2.7e-18 97.4 277 36.1
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 6.8e-14 82.8 131 39.7
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.5e-13 81.6 123 40.7
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 2.0e-13 81.3 110 43.6
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 4.9e-12 76.6 51 60.8
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 9.2e-11 72.4 233 30.9
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.0e-09 68.9 177 31.6
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.7e-09 68.2 78 46.2
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.3e-08 63.5 53 49.1
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 5.6e-08 63.2 206 28.6
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 9.5e-08 62.4 78 42.3
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.4e-06 58.5 147 32.7


User provided reference genes

Program Settings