Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 2.4e-295 1018.1 510 100.0
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.0e-145 520.0 429 63.6
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 7.3e-143 511.5 400 69.8
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.8e-142 509.6 433 62.8
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.8e-141 506.9 427 62.8
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.7e-128 463.8 434 57.4
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 5.1e-128 462.2 425 57.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 5.6e-127 458.8 431 56.8
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.5e-124 450.7 431 56.4
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 7.6e-124 448.4 432 54.6
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.7e-123 447.2 429 56.4
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.8e-123 446.0 429 56.9
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.1e-119 434.5 430 53.5
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 3.3e-119 433.0 432 54.9
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 5.6e-119 432.2 424 56.4
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.1e-118 430.3 423 54.4
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 4.8e-118 429.1 423 54.8
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 8.1e-118 428.3 428 53.0
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.1e-117 427.9 423 54.1
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.7e-115 420.6 431 53.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.7e-115 420.6 422 53.6
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 2.9e-115 419.9 418 55.3
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 6.4e-115 418.7 418 55.0
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 2.4e-114 416.8 422 54.3
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 3.2e-114 416.4 435 54.0
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 4.2e-114 416.0 432 53.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.1e-114 415.2 419 53.0
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 9.3e-114 414.8 430 53.0
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.6e-113 414.1 420 53.6
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 2.1e-113 413.7 421 54.2
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 4.6e-113 412.5 429 53.1
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.0e-112 411.4 433 52.0
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 1.8e-112 410.6 432 51.4
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 2.3e-112 410.2 418 54.5
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.3e-112 410.2 418 54.5
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 5.1e-112 409.1 421 53.0
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.1e-111 407.9 422 52.6
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.9e-111 407.1 422 52.6
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 3.3e-111 406.4 432 51.2
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 7.4e-111 405.2 421 53.2
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.3e-110 404.4 427 51.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.6e-110 404.1 419 53.0
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 1.4e-109 401.0 467 51.2
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 2.4e-109 400.2 423 52.5
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 2.4e-109 400.2 423 50.8
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 3.1e-109 399.8 418 52.9
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 3.1e-109 399.8 422 51.9
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 4.0e-109 399.4 427 51.1
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.0e-109 399.4 427 51.1
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 6.9e-109 398.7 428 52.3
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.2e-108 397.9 430 51.2
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.6e-108 396.7 427 50.4
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.6e-108 396.7 427 50.4
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 5.8e-108 395.6 419 52.0
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.8e-108 395.6 427 50.6
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 5.8e-108 395.6 435 51.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.7e-107 394.0 427 51.5
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.7e-107 394.0 428 50.9
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.7e-107 394.0 431 51.3
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.2e-107 393.7 427 50.6
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.9e-107 393.3 451 49.4
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.1e-106 391.3 429 51.3
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.4e-106 391.0 430 50.9
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.6e-105 387.5 435 50.1
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.7e-105 386.7 417 51.3
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 4.6e-105 386.0 413 50.4
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 3.0e-104 383.3 421 49.4
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 3.0e-104 383.3 419 49.9
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 6.7e-104 382.1 490 47.1
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 8.7e-104 381.7 422 48.8
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.1e-103 381.3 402 52.7
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 4.3e-103 379.4 424 49.1
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 7.4e-103 378.6 422 49.5
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 9.6e-103 378.3 428 49.3
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.6e-102 377.5 432 49.8
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.1e-102 377.1 427 49.9
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.1e-101 374.8 417 49.4
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 4.0e-101 372.9 422 50.0
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.0e-101 372.9 437 49.2
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 6.9e-101 372.1 411 51.3
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.2e-100 371.3 422 47.6
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.5e-100 370.9 415 49.6
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.0e-100 370.5 428 50.0
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.5e-100 369.4 426 49.3
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.9e-99 366.7 432 47.7
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.9e-99 366.7 420 48.3
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.9e-99 366.7 426 49.1
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.2e-98 363.2 425 48.7
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 6.0e-97 359.0 419 48.2
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 7.9e-97 358.6 183 100.0
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 3.0e-96 356.7 408 48.0
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.8e-94 350.1 426 47.2
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.7e-94 349.7 424 48.1
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 6.9e-93 345.5 440 44.1
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 9.0e-93 345.1 405 47.7
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.6e-92 343.6 405 46.9
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 5.9e-92 342.4 405 46.7
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 5.9e-92 342.4 438 44.3
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.7e-91 340.9 411 47.7
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 7.2e-90 335.5 428 44.9
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 3.9e-88 329.7 432 46.8
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 3.3e-87 326.6 423 45.2
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 3.3e-87 326.6 497 42.1
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.7e-86 323.2 331 51.7
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 3.6e-81 306.6 482 40.7
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 6.1e-81 305.8 307 54.1
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 9.7e-79 298.5 295 53.9
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 8.2e-78 295.4 306 51.3
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 7.7e-76 288.9 428 45.6
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.5e-74 283.9 300 49.7
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 9.4e-74 282.0 284 51.4
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-71 274.6 413 42.6
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.3e-70 271.6 243 59.7
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.6e-68 263.8 454 36.1
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.1e-66 258.5 435 37.2
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.1e-65 254.2 402 40.5
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.4e-61 241.5 425 37.6
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 2.5e-58 230.7 410 38.8
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.1e-57 227.6 468 34.4
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.6e-55 220.7 490 32.9
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.8e-53 214.5 436 34.4
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.8e-48 198.0 297 37.4
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 2.3e-48 197.6 197 50.3
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 4.0e-48 196.8 208 51.4
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 4.4e-47 193.4 288 41.3
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 9.8e-47 192.2 212 49.1
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 4.4e-39 166.8 200 47.0
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-38 165.2 186 46.8
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.4e-38 162.9 212 43.9
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-34 151.8 110 61.8
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 5.8e-23 113.2 176 45.5
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.9e-22 110.9 88 61.4
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 3.7e-22 110.5 330 30.3
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 4.3e-18 97.1 182 39.6
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 4.4e-15 87.0 115 45.2
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 5.8e-15 86.7 183 32.2
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 9.2e-13 79.3 112 44.6
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.3e-11 75.5 89 47.2
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 8.7e-11 72.8 81 49.4
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 7.3e-10 69.7 63 57.1
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.3e-10 69.7 63 57.1
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.1e-09 68.2 56 60.7
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.0e-08 63.9 143 36.4
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-07 62.4 105 45.7
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-07 62.4 105 45.7


User provided reference genes

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