Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold344G49473 Striga asiatica HOM05D057539 ORTHO05D030495 6.1e-91 337.4 165 100.0
SGA_v2.0_scaffold151G36755 Striga asiatica HOM05D000003 ORTHO05D000004 8.1e-11 71.2 49 63.3
SGA_v2.0_scaffold17G08173 Striga asiatica HOM05D000003 ORTHO05D000004 6.9e-10 68.2 49 65.3
SGA_v2.0_scaffold248G44935 Striga asiatica HOM05D000003 ORTHO05D030495 2.0e-09 66.6 52 61.5
SGA_v2.0_scaffold43G16292 Striga asiatica HOM05D000003 ORTHO05D000006 2.6e-09 66.2 116 34.5
SGA_v2.0_scaffold52G19161 Striga asiatica HOM05D057539 ORTHO05D404352 3.4e-09 65.9 84 45.2
TWI09G0223 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.7e-08 63.5 65 46.2
Aa31sc773G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.9e-08 62.8 51 52.9
CANSAT80G2272 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-08 61.6 72 44.4
Aa31LG10G9400 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.4e-08 61.2 86 36.0
Aa31LG5G23430 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.4e-08 61.2 76 39.5
CANSAT80G0283 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-08 61.2 46 54.3
CANSAT25G3699 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.8 57 45.6
QL05p068740 Quercus lobata HOM05D000003 ORTHO05D000004 1.1e-07 60.8 51 49.0
QL05p069113 Quercus lobata HOM05D000003 ORTHO05D000004 1.1e-07 60.8 51 49.0
CANSAT35G1919 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.5 46 56.5
Prupe.6G123900 Prunus persica HOM05D000003 ORTHO05D000004 1.4e-07 60.5 51 47.1
Aa31LG2G14760 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.9e-07 60.1 48 54.2
Aa31LG7G5890 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.9e-07 60.1 48 54.2
CANSAT01G0149 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 60.1 79 40.5
Prupe.4G011200 Prunus persica HOM05D000003 ORTHO05D000004 1.9e-07 60.1 51 47.1
Sed0011046 Sechium edule HOM05D000003 ORTHO05D000126 1.9e-07 60.1 52 50.0
Atru.chr6.1548 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-07 59.7 51 45.1
Cc01_g07280 Coffea canephora HOM05D000003 ORTHO05D000004 2.5e-07 59.7 73 39.7
SGA_v2.0_scaffold14G07070 Striga asiatica HOM05D000003 ORTHO05D000004 2.5e-07 59.7 49 53.1
SGA_v2.0_scaffold23G10019 Striga asiatica HOM05D000003 ORTHO05D000004 2.5e-07 59.7 51 49.0
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 2.5e-07 59.7 87 40.2
Aa31LG10G11070 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-07 59.3 50 50.0
Aa31LG1G4840 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-07 59.3 51 54.9
Aa31LG8G12080 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-07 59.3 51 49.0
Aa31sc2056G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-07 59.3 48 52.1
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 3.2e-07 59.3 49 46.9
SGA_v2.0_scaffold298G47693 Striga asiatica HOM05D000003 ORTHO05D000004 3.2e-07 59.3 47 51.1
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-07 58.9 51 51.0
CANSAT25G0932 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-07 58.9 63 42.9
CANSAT35G1518 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-07 58.9 46 50.0
CANSAT56G1996 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-07 58.9 52 50.0
CANSAT78G2184 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-07 58.9 63 42.9
CANSAT80G0348 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-07 58.9 58 48.3
Aa31LG8G11510 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-07 58.5 51 51.0
Aa31LG9G1700 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-07 58.5 49 49.0
Aa31sc380G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-07 58.5 52 53.8
Aa31sc555G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-07 58.5 46 60.9
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-07 58.5 51 47.1
SGA_v2.0_scaffold344G49482 Striga asiatica HOM05D000003 ORTHO05D000004 5.5e-07 58.5 46 58.7
Aa31LG1G5100 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.1e-07 58.2 52 51.9
Aa31LG2G12260 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.1e-07 58.2 51 52.9
Aa31sc914G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.1e-07 58.2 46 52.2
BcaB04g19028 Brassica carinata HOM05D000003 ORTHO05D000004 7.1e-07 58.2 45 55.6
CANSAT01G1897 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-07 58.2 51 43.1
CANSAT11G1229 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-07 58.2 52 44.2
CANSAT21G0453 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-07 58.2 52 44.2
CANSAT21G1936 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-07 58.2 52 48.1
CANSAT80G0722 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-07 58.2 49 55.1
FvH4_5g27367 Fragaria vesca HOM05D000003 ORTHO05D000004 7.1e-07 58.2 46 50.0
Aa31LG9G6680 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.3e-07 57.8 52 51.9
Aa31sc427G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.3e-07 57.8 49 51.0
CANSAT01G1250 Cannabis sativa HOM05D000003 ORTHO05D000167 9.3e-07 57.8 52 51.9
SGA_v2.0_scaffold27G11475 Striga asiatica HOM05D000003 ORTHO05D000004 9.3e-07 57.8 44 56.8
Aa31LG10G7630 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 57.4 70 38.6
Aa31LG4G12650 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 57.4 46 54.3
Aa31sc153G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 57.4 77 37.7
Aa31sc56G70 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 57.4 48 58.3
CANSAT78G0390 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.4 61 42.6
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 57.4 49 49.0
Aa31LG11G5340 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 46 54.3
Aa31LG3G12630 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 44 56.8
Aa31LG6G3800 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 46 54.3
Aa31LG6G7750 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 46 54.3
Aa31LG9G3000 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 50 50.0
Aa31sc142G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 46 54.3
Aa31sc18G100 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 46 56.5
CANSAT11G0486 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 57.0 49 53.1
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 57.0 56 41.1
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 57.0 51 41.2
QL04p012310 Quercus lobata HOM05D000009 ORTHO05D000008 1.6e-06 57.0 49 46.9
QL09p045506 Quercus lobata HOM05D000003 ORTHO05D000004 1.6e-06 57.0 48 45.8
SGA_v2.0_scaffold113G31740 Striga asiatica HOM05D000003 ORTHO05D000004 1.6e-06 57.0 106 33.0
Aa31LG11G9560 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 46 58.7
Aa31LG6G10540 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 46 56.5
Aa31LG7G10990 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 49 51.0
Aa31sc44G30 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 46 56.5
Aa31sc688G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 44 59.1
CANSAT01G0451 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.6 51 49.0
CANSAT11G1324 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.6 52 50.0
CANSAT64G0593 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.6 51 39.2
CANSAT64G2795 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.6 46 47.8
Os12g0407750 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000004 2.1e-06 56.6 47 53.2
Aa31LG11G7720 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 73 42.5
Aa31LG1G4180 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 46 54.3
Aa31LG1G4610 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 46 58.7
Aa31LG6G15220 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 57 42.1
Aa31LG8G12510 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 46 52.2
Aa31sc502G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 50 52.0
Aa31sc729G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 46 54.3
Aa31sc759G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 57 45.6
CANSAT21G1041 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 56.2 52 50.0
CANSAT25G2643 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 56.2 52 46.2
CANSAT35G1614 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 56.2 51 47.1
CANSAT64G1529 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 56.2 51 49.0
CANSAT78G2353 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 56.2 52 50.0
QL03p016835 Quercus lobata HOM05D000003 ORTHO05D000004 2.7e-06 56.2 48 43.8
TPR.G37077 Trifolium pratense HOM05D000003 ORTHO05D000004 2.7e-06 56.2 50 48.0
Aa31sc178G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.5e-06 55.8 46 54.3
Aa31sc85G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.5e-06 55.8 48 54.2
Aqoxy3G02165 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.5e-06 55.8 86 37.2
BcaC06g30787 Brassica carinata HOM05D000003 ORTHO05D000004 3.5e-06 55.8 48 50.0
CANSAT01G1337 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 55.8 52 46.2
CANSAT54G1002 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 55.8 52 44.2
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 55.8 51 41.2
MD08G1205700 Malus domestica HOM05D000003 ORTHO05D000004 3.5e-06 55.8 48 54.2
QL01p036379 Quercus lobata HOM05D000003 ORTHO05D000004 3.5e-06 55.8 48 47.9
TPR.G7198 Trifolium pratense HOM05D000003 ORTHO05D000004 3.5e-06 55.8 48 54.2
Atru.chr1.2568 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 47 53.2
Aa31LG10G11530 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 50 48.0
Aa31LG2G18410 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 44 54.5
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 48 52.1
Aa31LG8G11140 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 44 54.5
Aa31sc16G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 51 51.0
Aa31sc51G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 46 56.5
Aqoxy2G02194 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 4.6e-06 55.5 69 37.7
C07p06100 Brassica napus HOM05D000003 ORTHO05D000004 4.6e-06 55.5 54 44.4
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 55.5 51 41.2
CANSAT54G0106 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 55.5 51 49.0
CANSAT56G1304 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 55.5 52 46.2
CANSAT78G0786 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 55.5 56 41.1
CANSAT80G0437 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 55.5 52 46.2
CANSAT80G1067 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 55.5 52 48.1
Aa31LG9G5230 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.0e-06 55.1 51 45.1
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.0e-06 55.1 48 50.0
Aa31sc360G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.0e-06 55.1 47 53.2
Aa31sc823G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.0e-06 55.1 52 48.1
CANSAT21G2200 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-06 55.1 52 50.0
CANSAT54G0363 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-06 55.1 51 41.2
CANSAT64G2061 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-06 55.1 52 50.0
CANSAT78G1435 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-06 55.1 56 41.1
CANSAT78G2409 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-06 55.1 52 44.2
FvH4_3g07263 Fragaria vesca HOM05D000003 ORTHO05D000004 6.0e-06 55.1 47 48.9
FvH4_5g08581 Fragaria vesca HOM05D000003 ORTHO05D000004 6.0e-06 55.1 47 48.9
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 6.0e-06 55.1 49 49.0
QL12p036057 Quercus lobata HOM05D001694 ORTHO05D000248 6.0e-06 55.1 52 44.2
RhsimUnG0143000 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.0e-06 55.1 51 47.1
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 6.0e-06 55.1 51 45.1
Aa31LG2G18130 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.9e-06 54.7 46 50.0
Aa31LG3G3520 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.9e-06 54.7 54 46.3
Aa31LG4G19060 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.9e-06 54.7 50 48.0
Aa31LG4G8300 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.9e-06 54.7 48 47.9
Aa31LG8G16480 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.9e-06 54.7 49 53.1
Aa31sc808G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.9e-06 54.7 49 46.9
CANSAT11G0732 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-06 54.7 47 48.9
CANSAT25G1545 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-06 54.7 63 46.0
CANSAT35G1823 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-06 54.7 63 44.4
CANSAT78G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-06 54.7 51 49.0
CANSAT78G0999 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-06 54.7 51 47.1
SGA_v2.0_scaffold250G45022 Striga asiatica HOM05D000003 ORTHO05D000004 7.9e-06 54.7 48 50.0


User provided reference genes

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