Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold343G49467 Striga asiatica HOM05D040592 ORTHO05D399604 2.3e-176 622.1 311 100.0
SGA_v2.0_scaffold202G41435 Striga asiatica HOM05D040592 ORTHO05D400616 2.0e-172 609.0 311 98.1
SGA_v2.0_scaffold202G41437 Striga asiatica HOM05D040592 ORTHO05D404843 4.9e-150 534.6 311 89.1
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 1.8e-11 74.3 209 32.5
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 3.1e-11 73.6 222 32.0
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 3.1e-11 73.6 205 32.7
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 3.1e-11 73.6 216 32.9
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 5.3e-11 72.8 209 32.5
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 5.3e-11 72.8 209 32.5
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 9.0e-11 72.0 223 31.8
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 1.2e-10 71.6 209 32.1
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 1.2e-10 71.6 221 31.7
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 1.2e-10 71.6 217 33.2
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 1.2e-10 71.6 221 31.7
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.5e-10 71.2 209 33.0
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 1.5e-10 71.2 209 33.0
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 1.5e-10 71.2 209 33.0
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 2.0e-10 70.9 209 32.5
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 2.0e-10 70.9 209 32.5
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 2.0e-10 70.9 209 32.5
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 2.0e-10 70.9 221 31.2
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 2.0e-10 70.9 209 33.0
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 2.0e-10 70.9 209 33.0
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 2.0e-10 70.9 209 33.0
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 2.0e-10 70.9 217 32.7
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 2.0e-10 70.9 209 32.5
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 2.6e-10 70.5 216 31.9
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 2.6e-10 70.5 218 31.7
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 2.6e-10 70.5 218 31.7
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 2.6e-10 70.5 218 31.7
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 2.6e-10 70.5 209 33.0
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 2.6e-10 70.5 221 31.7
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 3.4e-10 70.1 202 34.2
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 3.4e-10 70.1 209 32.1
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 3.4e-10 70.1 209 32.5
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 3.4e-10 70.1 209 32.5
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 3.4e-10 70.1 221 31.7
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 3.4e-10 70.1 223 31.4
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 3.4e-10 70.1 209 32.5
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 4.5e-10 69.7 209 33.0
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 4.5e-10 69.7 218 31.2
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 4.5e-10 69.7 209 33.0
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 4.5e-10 69.7 209 32.1
FAN12G0555 Fragaria x ananassa HOM05D003413 ORTHO05D004197 4.5e-10 69.7 209 32.5
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 4.5e-10 69.7 209 32.5
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 4.5e-10 69.7 209 32.1
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 4.5e-10 69.7 209 32.1
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 4.5e-10 69.7 217 32.3
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 4.5e-10 69.7 209 32.5
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 5.8e-10 69.3 209 32.1
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 5.8e-10 69.3 209 32.5
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 32.1
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 32.1
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 7.6e-10 68.9 202 33.2
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 32.5
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 32.1
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 33.0
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 7.6e-10 68.9 238 31.5
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 7.6e-10 68.9 209 32.1
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 1.0e-09 68.6 202 33.7
AUR62005593 Chenopodium quinoa HOM05D003413 ORTHO05D004197 1.0e-09 68.6 209 32.5
AUR62024135 Chenopodium quinoa HOM05D003413 ORTHO05D004197 1.0e-09 68.6 209 32.5
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 1.0e-09 68.6 217 31.8
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 1.0e-09 68.6 209 32.5
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 1.0e-09 68.6 209 32.1
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 1.0e-09 68.6 209 32.1
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 1.0e-09 68.6 209 31.6
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 1.0e-09 68.6 209 32.5
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 1.3e-09 68.2 209 32.5
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 1.3e-09 68.2 209 33.0
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 1.3e-09 68.2 216 31.5
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 1.3e-09 68.2 221 30.3
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 1.3e-09 68.2 223 30.9
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 1.3e-09 68.2 209 31.6
Sed0010714 Sechium edule HOM05D003413 ORTHO05D004197 1.3e-09 68.2 209 32.1
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 1.7e-09 67.8 209 32.5
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 1.7e-09 67.8 218 31.2
MBI04_g08407_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 1.7e-09 67.8 209 31.6
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 1.7e-09 67.8 202 32.7
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 1.7e-09 67.8 209 32.1
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 2.2e-09 67.4 202 32.7
Ah.03g136290 Amaranthus hybridus HOM05D003413 ORTHO05D004197 2.2e-09 67.4 225 31.6
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 2.2e-09 67.4 218 30.7
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 2.9e-09 67.0 202 33.2
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 2.9e-09 67.0 202 33.2
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 2.9e-09 67.0 202 32.2
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 2.9e-09 67.0 209 31.6
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 2.9e-09 67.0 209 31.1
Prupe.1G229300 Prunus persica HOM05D003413 ORTHO05D004197 2.9e-09 67.0 209 32.1
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 2.9e-09 67.0 257 30.4
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 2.9e-09 67.0 209 32.5
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 2.9e-09 67.0 209 32.5
CAN.G694.91 Capsicum annuum HOM05D003413 ORTHO05D004197 3.8e-09 66.6 209 31.6
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 3.8e-09 66.6 220 30.9
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 3.8e-09 66.6 202 32.2
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 3.8e-09 66.6 208 31.2
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 4.9e-09 66.2 202 33.2
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 4.9e-09 66.2 202 33.2
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 4.9e-09 66.2 199 32.2
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 4.9e-09 66.2 209 32.1
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 4.9e-09 66.2 202 33.2
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 4.9e-09 66.2 209 32.1
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 4.9e-09 66.2 202 33.2
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 4.9e-09 66.2 202 33.2
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 4.9e-09 66.2 202 33.2
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 4.9e-09 66.2 209 32.5
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 6.5e-09 65.9 218 30.3
Sc01g0009880 Simmondsia chinensis HOM05D003413 ORTHO05D004197 6.5e-09 65.9 221 31.2
Solyc05g056160.3 Solanum lycopersicum HOM05D003413 ORTHO05D004197 6.5e-09 65.9 209 31.6
Sopen05g034570 Solanum pennellii HOM05D003413 ORTHO05D004197 6.5e-09 65.9 209 31.6
PGSC0003DMG400023337 Solanum tuberosum HOM05D003413 ORTHO05D004197 6.5e-09 65.9 209 31.6
Zm00001eb376670 Zea mays HOM05D003413 ORTHO05D004197 6.5e-09 65.9 204 32.4
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea HOM05D003413 ORTHO05D004197 8.4e-09 65.5 207 30.9
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 8.4e-09 65.5 209 31.6
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 1.1e-08 65.1 205 31.2
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 1.1e-08 65.1 220 32.3
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 1.1e-08 65.1 202 32.2
Rhsim12G0102400 Rhododendron simsii HOM05D003413 ORTHO05D004197 1.4e-08 64.7 236 28.8
MELO3C011449.2 Cucumis melo HOM05D003413 ORTHO05D004197 1.9e-08 64.3 169 33.1
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 1.9e-08 64.3 202 32.2
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 1.9e-08 64.3 202 31.7
COL.COLO4_20354 Corchorus olitorius HOM05D003413 ORTHO05D004197 2.5e-08 63.9 202 32.2
EL10Ac6g13472 Beta vulgaris HOM05D003413 ORTHO05D004197 3.2e-08 63.5 191 32.5
Migut.E00028 Erythranthe guttata HOM05D003413 ORTHO05D004197 3.2e-08 63.5 209 30.6
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 3.2e-08 63.5 208 29.8
unitig_62.g23655 Utricularia gibba HOM05D003413 ORTHO05D004197 3.2e-08 63.5 210 31.4
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 5.5e-08 62.8 209 30.6
FvH4_4g24020 Fragaria vesca HOM05D003413 ORTHO05D004197 9.3e-08 62.0 152 34.2
Os06g0153800 Oryza sativa ssp. japonica HOM05D003413 ORTHO05D004197 1.2e-07 61.6 202 32.2
PRCOL_00003194 Prasinoderma coloniale HOM05D003413 ORTHO05D004197 2.1e-07 60.8 224 26.3
Hund21776 Selenicereus undatus HOM05D003413 ORTHO05D004197 6.0e-07 59.3 233 29.2
Mapoly0021s0078 Marchantia polymorpha HOM05D003413 ORTHO05D004197 7.9e-07 58.9 279 27.6
CBR_g23349 Chara braunii HOM05D003413 ORTHO05D004197 2.3e-06 57.4 212 27.8
Sabra08G0134800 Salix brachista HOM05D003413 ORTHO05D004197 3.9e-06 56.6 242 28.1
CDE07G0715 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 5.1e-06 56.2 207 29.5
CBR_g34466 Chara braunii HOM05D003413 ORTHO05D004197 5.1e-06 56.2 212 27.4
Pp3c7_21050 Physcomitrium patens HOM05D003413 ORTHO05D004197 5.1e-06 56.2 168 29.2


User provided reference genes

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