Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.8e-304 1048.5 552 100.0
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 2.0e-154 550.1 676 54.0
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 5.3e-123 445.7 617 47.6
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 6.1e-119 432.2 664 45.0
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 7.9e-119 431.8 665 45.3
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 2.0e-109 400.6 548 46.0
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 9.7e-109 398.3 644 42.9
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.3e-108 397.9 650 42.8
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.7e-108 397.5 567 45.9
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.7e-108 397.5 567 45.9
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.8e-108 396.7 639 42.4
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 9.1e-107 391.7 553 46.1
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 3.5e-106 389.8 566 44.7
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 4.5e-106 389.4 574 45.5
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.0e-105 388.3 629 43.2
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 6.5e-105 385.6 552 45.7
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 8.5e-105 385.2 560 44.5
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 8.5e-105 385.2 555 44.9
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 1.5e-104 384.4 584 43.7
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.5e-104 383.6 554 45.7
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 2.5e-104 383.6 552 44.7
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 5.5e-104 382.5 621 44.0
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.2e-103 381.3 591 43.5
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.7e-103 380.2 582 44.5
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 6.1e-103 379.0 551 44.8
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 6.1e-103 379.0 614 44.3
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.4e-102 377.9 612 42.5
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.4e-102 377.9 552 45.3
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.8e-102 377.5 599 45.6
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 3.0e-102 376.7 583 43.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 4.0e-102 376.3 587 44.3
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 5.2e-102 375.9 548 44.7
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 8.8e-102 375.2 608 44.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.3e-100 368.6 640 41.2
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.1e-99 368.2 603 43.8
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.8e-99 367.5 568 44.2
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 4.1e-99 366.3 599 42.7
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 7.0e-99 365.5 599 43.2
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 9.1e-99 365.2 596 42.8
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 9.1e-99 365.2 597 45.1
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 2.2e-97 360.5 589 42.6
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.1e-96 358.2 656 40.5
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 2.5e-96 357.1 607 41.7
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.2e-96 356.3 556 43.7
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 7.2e-96 355.5 600 41.2
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 9.5e-96 355.1 600 41.8
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.2e-95 354.8 555 41.8
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 1.2e-95 354.8 543 44.6
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.1e-95 354.0 571 43.1
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.0e-94 351.7 613 41.3
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.3e-94 350.5 606 40.8
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 5.2e-94 349.4 566 43.1
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 5.2e-94 349.4 616 40.7
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 6.8e-94 349.0 587 41.9
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 1.2e-93 348.2 583 42.5
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.5e-93 347.8 627 39.2
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 2.0e-93 347.4 595 42.7
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 3.4e-93 346.7 554 45.5
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.3e-92 344.7 578 40.3
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.8e-92 343.6 577 41.9
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.1e-91 341.7 670 37.9
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.4e-91 341.3 592 41.6
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.1e-91 339.7 605 41.2
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 4.1e-91 339.7 545 41.8
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 1.2e-90 338.2 667 37.8
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.0e-90 337.4 587 42.4
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 2.0e-90 337.4 635 39.2
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 3.5e-90 336.7 599 41.1
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.5e-90 336.3 567 42.2
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 7.7e-90 335.5 555 42.3
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.0e-89 335.1 645 38.9
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.0e-89 335.1 582 40.9
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.3e-89 334.7 586 41.0
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 3.3e-88 330.1 603 39.1
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 3.3e-88 330.1 430 47.2
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 5.6e-88 329.3 592 40.2
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 6.8e-86 322.4 523 41.5
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 6.8e-86 322.4 523 43.4
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 8.9e-86 322.0 547 40.8
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.2e-85 321.6 523 41.5
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 3.4e-85 320.1 604 39.4
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 4.9e-84 316.2 718 34.8
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 4.6e-82 309.7 605 38.7
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 8.6e-81 305.4 569 39.7
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.5e-80 304.7 241 66.0
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 2.5e-80 303.9 612 38.9
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 3.1e-78 297.0 609 38.9
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 4.0e-78 296.6 631 36.3
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.3e-76 288.9 576 38.0
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 8.3e-76 288.9 455 45.7
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.1e-75 288.5 587 39.5
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 2.4e-75 287.3 608 37.3
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 2.7e-74 283.9 580 37.6
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 4.6e-74 283.1 581 37.7
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 4.6e-74 283.1 544 38.4
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 7.8e-74 282.3 599 37.7
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 7.8e-74 282.3 599 37.7
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.3e-73 280.8 542 40.4
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 2.3e-73 280.8 564 38.7
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.1e-72 278.5 560 38.6
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.9e-72 277.7 420 46.2
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 4.3e-72 276.6 595 37.8
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.1e-71 272.3 526 38.6
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 4.4e-69 266.5 472 40.0
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 9.8e-69 265.4 585 37.4
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 3.7e-68 263.5 477 40.9
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 2.4e-67 260.8 471 39.3
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 4.6e-66 256.5 198 68.7
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 7.3e-64 249.2 268 53.0
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 3.8e-60 236.9 207 58.0
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 2.3e-57 227.6 498 38.8
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 8.4e-52 209.1 496 37.9
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 6.9e-46 189.5 263 43.3
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 6.9e-46 189.5 153 64.1
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.5e-45 188.3 218 45.4
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 1.3e-39 168.7 164 56.7
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 3.1e-38 164.1 149 57.7
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 9.0e-38 162.5 233 39.5
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 2.2e-36 157.9 387 34.9
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.1e-35 155.6 482 34.2
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 2.7e-34 151.0 121 59.5
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 4.6e-34 150.2 388 31.7
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 6.0e-34 149.8 456 32.5
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 1.3e-31 142.1 311 35.7
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 1.6e-31 141.7 155 52.3
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 4.0e-30 137.1 397 33.2
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 6.5e-28 129.8 399 31.1
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 9.3e-27 125.9 149 45.6
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 3.7e-23 114.0 74 68.9
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 8.2e-23 112.8 220 36.8
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.1e-22 112.5 116 55.2
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.1e-19 102.4 122 47.5
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 7.2e-19 99.8 139 39.6
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 4.6e-18 97.1 140 45.0
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-15 89.0 119 47.9
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 5.3e-14 83.6 117 41.0
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.9e-12 77.8 72 55.6
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 8.5e-12 76.3 61 63.9
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.6e-10 72.0 60 58.3
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-08 65.9 47 63.8
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.3e-08 64.3 55 56.4
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 4.4e-08 63.9 149 29.5
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 2.8e-07 61.2 38 73.7
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 1.4e-06 58.9 55 47.3


User provided reference genes

Program Settings