Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold342G49421 Striga asiatica HOM05D006483 ORTHO05D007837 3.6e-260 901.0 427 100.0
SalBow6G1047 Salvia bowleyana HOM05D006483 ORTHO05D007837 5.6e-181 637.9 420 75.2
Migut.B00501 Erythranthe guttata HOM05D006483 ORTHO05D007837 2.2e-169 599.4 409 71.1
VMungo0540G0518 Vigna mungo HOM05D006483 ORTHO05D007837 3.3e-165 585.5 399 69.4
Sabra16G0180000 Salix brachista HOM05D006483 ORTHO05D007837 2.2e-164 582.8 407 68.8
Glyma.15G061600 Glycine max HOM05D006483 ORTHO05D007837 6.3e-164 581.3 405 68.6
Cc02_g20380 Coffea canephora HOM05D006483 ORTHO05D007837 1.1e-163 580.5 378 72.0
FAN20G1555 Fragaria x ananassa HOM05D006483 ORTHO05D007837 1.1e-163 580.5 402 70.4
FAN24G1160 Fragaria x ananassa HOM05D006483 ORTHO05D007837 1.8e-163 579.7 405 69.9
MD10G1115000 Malus domestica HOM05D006483 ORTHO05D007837 1.8e-163 579.7 391 69.8
Phvul.006G198100 Phaseolus vulgaris HOM05D006483 ORTHO05D007837 1.8e-163 579.7 395 69.6
FAN27G0654 Fragaria x ananassa HOM05D006483 ORTHO05D007837 6.9e-163 577.8 407 69.5
Rhsim11G0146300 Rhododendron simsii HOM05D006483 ORTHO05D007837 2.0e-162 576.2 374 73.3
Ciclev10030436m.g Citrus clementina HOM05D006483 ORTHO05D007837 5.9e-162 574.7 403 69.0
FvH4_2g02550 Fragaria vesca HOM05D006483 ORTHO05D007837 5.9e-162 574.7 405 69.4
Lj1g0015418 Lotus japonicus HOM05D006483 ORTHO05D007837 7.7e-162 574.3 410 66.1
Potri.001G287700 Populus trichocarpa HOM05D006483 ORTHO05D007837 7.7e-162 574.3 399 69.2
Cfa004758 Carpinus fangiana HOM05D006483 ORTHO05D007837 1.0e-161 573.9 405 67.4
Prupe.8G157100 Prunus persica HOM05D006483 ORTHO05D007837 1.3e-161 573.5 395 69.1
vmacro01915 Vaccinium macrocarpon HOM05D006483 ORTHO05D007837 1.3e-161 573.5 373 72.4
Solyc11g044310.2 Solanum lycopersicum HOM05D006483 ORTHO05D007837 6.5e-161 571.2 404 66.8
Sopen11g019810 Solanum pennellii HOM05D006483 ORTHO05D007837 6.5e-161 571.2 404 66.8
Lalb_Chr15g0090221 Lupinus albus HOM05D006483 ORTHO05D007837 8.5e-161 570.9 406 67.0
arahy.Tifrunner.gnm1.ann1.SKNB9F Arachis hypogaea HOM05D006483 ORTHO05D007837 1.1e-160 570.5 384 69.3
Dinv09500 Davidia involucrata HOM05D006483 ORTHO05D007837 1.4e-160 570.1 344 75.9
unitig_21.g20708 Utricularia gibba HOM05D006483 ORTHO05D007837 1.4e-160 570.1 349 75.4
CiPaw.06G161800 Carya illinoinensis HOM05D006483 ORTHO05D007837 4.2e-160 568.5 406 68.2
Gohir.D12G041300 Gossypium hirsutum HOM05D006483 ORTHO05D007837 4.2e-160 568.5 395 69.4
Manes.07G049300 Manihot esculenta HOM05D006483 ORTHO05D007837 4.2e-160 568.5 362 73.5
Psat1g212200 Pisum sativum HOM05D006483 ORTHO05D007837 5.5e-160 568.2 398 67.8
RcHm_v2.0_Chr6g0246361 Rosa chinensis HOM05D006483 ORTHO05D007837 7.2e-160 567.8 391 69.1
Cpa.g.sc20.69 Carica papaya HOM05D006483 ORTHO05D007837 9.4e-160 567.4 347 75.2
Gohir.A12G031000 Gossypium hirsutum HOM05D006483 ORTHO05D007837 1.2e-159 567.0 370 72.4
Gorai.008G043200 Gossypium raimondii HOM05D006483 ORTHO05D007837 1.2e-159 567.0 395 69.1
Atru.chr5.2145 Acer truncatum HOM05D006483 ORTHO05D007837 1.6e-159 566.6 402 67.9
Sc14g0002760 Simmondsia chinensis HOM05D006483 ORTHO05D007837 1.6e-159 566.6 414 66.9
Ca_00195_v3 Cicer arietinum L. HOM05D006483 ORTHO05D007837 2.1e-159 566.2 350 74.3
Duzib132G0719 Durio zibethinus HOM05D006483 ORTHO05D007837 2.1e-159 566.2 399 69.4
Lsat_1_v5_gn_5_110541 Lactuca sativa HOM05D006483 ORTHO05D007837 3.6e-159 565.5 411 66.4
QL11p027690 Quercus lobata HOM05D006483 ORTHO05D007837 6.1e-159 564.7 374 70.6
FAN15G2441 Fragaria x ananassa HOM05D006483 ORTHO05D007837 7.9e-159 564.3 344 75.9
PGR142G2962 Punica granatum HOM05D006483 ORTHO05D007837 1.4e-158 563.5 358 72.6
Thecc.02G034600 Theobroma cacao HOM05D006483 ORTHO05D007837 1.4e-158 563.5 399 69.4
CiPaw.05G024900 Carya illinoinensis HOM05D006483 ORTHO05D007837 1.8e-158 563.1 344 74.4
Nn6g34537 Nelumbo nucifera HOM05D006483 ORTHO05D007837 1.8e-158 563.1 397 67.0
EL10Ac9g22152 Beta vulgaris HOM05D006483 ORTHO05D007837 2.3e-158 562.8 342 76.3
CAN.G475.27 Capsicum annuum HOM05D006483 ORTHO05D007837 2.3e-158 562.8 348 74.1
Duzib248G0339 Durio zibethinus HOM05D006483 ORTHO05D007837 3.0e-158 562.4 344 75.9
ClCG10G009710 Citrullus lanatus HOM05D006483 ORTHO05D007837 3.9e-158 562.0 350 74.0
Peaxi162Scf00152g00613 Petunia axillaris HOM05D006483 ORTHO05D007837 3.9e-158 562.0 375 70.1
Medtr2g010480 Medicago truncatula HOM05D006483 ORTHO05D007837 5.1e-158 561.6 342 75.7
Sed0015964 Sechium edule HOM05D006483 ORTHO05D007837 5.1e-158 561.6 352 73.3
CsaV3_4G014600 Cucumis sativus L. HOM05D006483 ORTHO05D007837 6.7e-158 561.2 339 76.1
TWI59G1265 Tripterygium wilfordii HOM05D006483 ORTHO05D007837 6.7e-158 561.2 404 67.6
Carub.0003s2843 Capsella rubella HOM05D006483 ORTHO05D007837 1.1e-157 560.5 407 67.3
GSVIVG01036968001 Vitis vinifera HOM05D006483 ORTHO05D007837 1.1e-157 560.5 349 72.8
HanXRQChr10g0297661 Helianthus annuus HOM05D006483 ORTHO05D007837 2.0e-157 559.7 382 69.4
ECA234G3552 Erigeron canadensis HOM05D006483 ORTHO05D007837 3.7e-156 555.4 338 76.0
Eucgr.I02515 Eucalyptus grandis HOM05D006483 ORTHO05D007837 6.3e-156 554.7 379 69.1
CANSAT25G2975 Cannabis sativa HOM05D006483 ORTHO05D007837 1.8e-155 553.1 385 68.6
TAR376G0523 Trochodendron aralioides HOM05D006483 ORTHO05D007837 1.8e-155 553.1 414 64.3
COL.COLO4_17833 Corchorus olitorius HOM05D006483 ORTHO05D007837 2.4e-155 552.7 366 71.6
Aa31LG8G12670 Aethionema arabicum HOM05D006483 ORTHO05D007837 9.1e-155 550.8 402 65.4
MSTRG.16655 Avicennia marina HOM05D006483 ORTHO05D007837 1.2e-154 550.4 314 80.9
Thhalv10022723m.g Eutrema salsugineum HOM05D006483 ORTHO05D007837 1.2e-154 550.4 364 69.8
CARHR105280 Cardamine hirsuta HOM05D006483 ORTHO05D007837 2.0e-154 549.7 333 75.4
AL3G45940 Arabidopsis lyrata HOM05D006483 ORTHO05D007837 2.6e-154 549.3 349 72.5
THA.LOC104819515 Tarenaya hassleriana HOM05D006483 ORTHO05D007837 2.6e-154 549.3 346 73.1
DCAR_029840 Daucus carota HOM05D006483 ORTHO05D007837 3.4e-154 548.9 345 73.9
BcaC01g03099 Brassica carinata HOM05D006483 ORTHO05D007837 4.5e-154 548.5 333 75.1
BolC3t17891H Brassica oleracea HOM05D006483 ORTHO05D007837 4.5e-154 548.5 333 75.1
BcaB08g34553 Brassica carinata HOM05D006483 ORTHO05D007837 1.0e-153 547.4 364 70.9
A03p45170 Brassica napus HOM05D006483 ORTHO05D007837 1.7e-153 546.6 333 74.8
BraA03t13652Z Brassica rapa HOM05D006483 ORTHO05D007837 1.7e-153 546.6 333 74.8
Sp3g27660 Schrenkiella parvula HOM05D006483 ORTHO05D007837 2.2e-153 546.2 373 68.9
AT2G14260 Arabidopsis thaliana HOM05D006483 ORTHO05D007837 8.5e-153 544.3 334 74.6
PSO541G5548 Papaver somniferum HOM05D006483 ORTHO05D007837 8.5e-153 544.3 342 72.2
Aqoxy6G02925 Aquilegia oxysepala HOM05D006483 ORTHO05D007837 1.1e-152 543.9 410 64.4
CSS0046506 Camellia sinensis var. sinensis HOM05D006483 ORTHO05D007837 1.9e-152 543.1 369 70.5
PSO675G7999 Papaver somniferum HOM05D006483 ORTHO05D007837 1.2e-151 540.4 342 71.9
Lj5C223T22 Lonicera japonica HOM05D006483 ORTHO05D007837 1.8e-150 536.6 378 69.0
C03p56040 Brassica napus HOM05D006483 ORTHO05D007837 2.0e-149 533.1 362 69.1
ATR0739G015 Amborella trichopoda HOM05D006483 ORTHO05D007837 3.3e-149 532.3 343 71.7
CSS0033600 Camellia sinensis var. sinensis HOM05D006483 ORTHO05D007837 9.4e-144 514.2 379 66.2
arahy.Tifrunner.gnm1.ann1.AKE21I Arachis hypogaea HOM05D006483 ORTHO05D007837 6.1e-143 511.5 384 63.8
HPP92_006303 Vanilla planifolia HOM05D006483 ORTHO05D007837 1.7e-140 503.4 383 63.2
MELO3C018038.2 Cucumis melo HOM05D006483 ORTHO05D007837 1.4e-139 500.4 373 66.2
TAR628G0755 Trochodendron aralioides HOM05D006483 ORTHO05D007837 7.0e-139 498.0 318 70.4
CDE02G1970 Ceratophyllum demersum HOM05D006483 ORTHO05D007837 3.2e-136 489.2 373 63.5
SMO145G0068 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 1.6e-135 486.9 331 66.5
Zm00001eb292750 Zea mays HOM05D006483 ORTHO05D007837 1.6e-135 486.9 305 72.5
AUR62027055 Chenopodium quinoa HOM05D006483 ORTHO05D007837 2.3e-134 483.0 355 66.5
AagrBONN_evm.TU.Sc2ySwM_344.4362 Anthoceros agrestis HOM05D006483 ORTHO05D007837 4.0e-134 482.3 337 64.4
Mapoly0001s0344 Marchantia polymorpha HOM05D006483 ORTHO05D007837 7.5e-133 478.0 338 65.1
Pp3c4_27270 Physcomitrium patens HOM05D006483 ORTHO05D007837 7.7e-130 468.0 326 64.4
Haze_10356 Corylus avellana HOM05D006483 ORTHO05D007837 7.2e-128 461.5 635 42.8
CBR_g8564 Chara braunii HOM05D006483 ORTHO05D007837 4.5e-122 442.2 334 62.0
Os05g0513900 Oryza sativa ssp. japonica HOM05D006483 ORTHO05D007837 7.8e-114 414.8 246 75.6
AUR62030898 Chenopodium quinoa HOM05D006483 ORTHO05D007837 1.2e-101 374.4 286 64.3
Ah.01g024350 Amaranthus hybridus HOM05D006483 ORTHO05D007837 7.5e-101 371.7 288 64.2
Nitab4.5_0007517g0010 Nicotiana tabacum HOM05D006483 ORTHO05D007837 4.9e-100 369.0 277 63.9
Actinidia00335 Actinidia chinensis HOM05D006483 ORTHO05D007837 4.3e-88 329.3 225 68.9
Mapoly0142s0028 Marchantia polymorpha HOM05D006483 ORTHO05D007837 2.0e-85 320.5 370 41.9
AagrBONN_evm.TU.Sc2ySwM_344.1401 Anthoceros agrestis HOM05D006483 ORTHO05D007837 6.6e-81 305.4 371 41.8
SMO353G0285 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 1.6e-79 300.8 335 43.6
SMO364G0301 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 4.8e-79 299.3 334 43.1
MBI16_g27214_MAGBIO Magnolia biondii HOM05D006483 ORTHO05D007837 7.9e-66 255.4 163 72.4
Zm00001eb142680 Zea mays HOM05D006483 ORTHO05D007837 3.7e-55 219.9 224 50.9
SEGI_12853 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 1.1e-54 218.4 125 75.2
PRCOL_00002897 Prasinoderma coloniale HOM05D006483 ORTHO05D007837 2.4e-54 217.2 334 38.9
MBI16_g41225_MAGBIO Magnolia biondii HOM05D006483 ORTHO05D007837 2.6e-53 213.8 215 52.1
EL10Ac8g19599 Beta vulgaris HOM05D006483 ORTHO05D007837 7.4e-48 195.7 128 71.9
MD05G1112500 Malus domestica HOM05D006483 ORTHO05D007837 3.8e-44 183.3 204 48.5
Cre08.g375600 Chlamydomonas reinhardtii HOM05D006483 ORTHO05D007837 8.5e-44 182.2 217 40.6
Oeu007495.1 Olea europaea HOM05D006483 ORTHO05D007837 5.5e-35 152.9 85 81.2
MD05G1112400 Malus domestica HOM05D006483 ORTHO05D007837 1.2e-21 108.6 71 67.6
SEGI_05070 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 7.0e-14 82.8 84 46.4
TPR.G27616 Trifolium pratense HOM05D006483 ORTHO05D007837 2.8e-10 70.9 38 78.9
arahy.Tifrunner.gnm1.ann1.W5BQ9H Arachis hypogaea HOM05D006483 ORTHO05D000252 1.0e-09 68.9 62 51.6
Pp3s30_380 Physcomitrium patens HOM05D000068 ORTHO05D020444 2.6e-08 64.3 102 36.3
Pp3s30_381 Physcomitrium patens HOM05D000068 ORTHO05D020444 2.6e-08 64.3 102 36.3
SEGI_04316 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 5.7e-08 63.2 34 67.6
Zm00001eb049690 Zea mays HOM05D003600 ORTHO05D004129 5.7e-08 63.2 52 53.8
HPP92_001752 Vanilla planifolia HOM05D000363 ORTHO05D000236 6.3e-07 59.7 129 31.0
FAN13G1163 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.1e-06 58.9 99 36.4
Lj1A727T51 Lonicera japonica HOM05D000363 ORTHO05D000236 1.1e-06 58.9 107 33.6
Aqoxy4G01159 Aquilegia oxysepala HOM05D000363 ORTHO05D000236 1.4e-06 58.5 99 33.3
Cpa.g.sc1028.5 Carica papaya HOM05D000363 ORTHO05D000236 1.4e-06 58.5 113 30.1
FvH4_5g27600 Fragaria vesca HOM05D000363 ORTHO05D000236 1.4e-06 58.5 99 35.4
FAN18G0326 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.4e-06 58.5 99 36.4
FAN19G0844 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.4e-06 58.5 99 34.3
FAN23G1950 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.4e-06 58.5 99 34.3
FAN26G0454 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.4e-06 58.5 99 34.3
RcHm_v2.0_Chr5g0007821 Rosa chinensis HOM05D000363 ORTHO05D000236 1.4e-06 58.5 99 32.3
Cfa023956 Carpinus fangiana HOM05D026080 ORTHO05D034125 2.4e-06 57.8 93 36.6
FAN16G1656 Fragaria x ananassa HOM05D000363 ORTHO05D000236 2.4e-06 57.8 99 33.3
Ca_18522_v3 Cicer arietinum L. HOM05D000363 ORTHO05D000236 3.2e-06 57.4 99 32.3
Ca_29900_v3 Cicer arietinum L. HOM05D000363 ORTHO05D000236 3.2e-06 57.4 99 32.3
FAN26G2646 Fragaria x ananassa HOM05D000363 ORTHO05D000236 4.1e-06 57.0 99 33.3
Potri.013G134800 Populus trichocarpa HOM05D000363 ORTHO05D000236 4.1e-06 57.0 79 40.5
RcHm_v2.0_Chr5g0007841 Rosa chinensis HOM05D000363 ORTHO05D000236 4.1e-06 57.0 117 30.8
FvH4_3g04781 Fragaria vesca HOM05D000363 ORTHO05D000236 5.4e-06 56.6 99 34.3
FAN21G0435 Fragaria x ananassa HOM05D000363 ORTHO05D000236 5.4e-06 56.6 99 34.3
FAN25G3617 Fragaria x ananassa HOM05D000363 ORTHO05D000236 5.4e-06 56.6 99 34.3
Nn1g06618 Nelumbo nucifera HOM05D000363 ORTHO05D000236 5.4e-06 56.6 115 33.0
MBI17_g03752_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D000236 7.0e-06 56.2 99 33.3
Aqoxy4G01087 Aquilegia oxysepala HOM05D000363 ORTHO05D000236 9.2e-06 55.8 99 35.4
CANSAT11G2375 Cannabis sativa HOM05D000363 ORTHO05D000236 9.2e-06 55.8 136 29.4
Ciclev10016000m.g Citrus clementina HOM05D000363 ORTHO05D000236 9.2e-06 55.8 109 28.4
Glyma.13G182100 Glycine max HOM05D000363 ORTHO05D000236 9.2e-06 55.8 99 31.3
PSO339G5342 Papaver somniferum HOM05D000363 ORTHO05D000236 9.2e-06 55.8 75 37.3
PSO384G1479 Papaver somniferum HOM05D000363 ORTHO05D000236 9.2e-06 55.8 102 33.3
Phvul.002G226500 Phaseolus vulgaris HOM05D000363 ORTHO05D000236 9.2e-06 55.8 100 33.0


User provided reference genes

Program Settings