Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold341G49377 Striga asiatica HOM05D007400 ORTHO05D009351 1.6e-118 429.5 218 100.0
Oeu050064.1 Olea europaea HOM05D007400 ORTHO05D009351 1.1e-50 204.1 204 58.3
Migut.L00012 Erythranthe guttata HOM05D007400 ORTHO05D009351 1.1e-47 194.1 223 56.1
Potri.012G119800 Populus trichocarpa HOM05D007400 ORTHO05D009351 3.2e-47 192.6 196 57.1
Cc09_g06320 Coffea canephora HOM05D007400 ORTHO05D009351 2.1e-46 189.9 211 55.0
FAN22G1838 Fragaria x ananassa HOM05D007400 ORTHO05D009351 6.0e-46 188.3 209 54.5
RcHm_v2.0_Chr4g0402661 Rosa chinensis HOM05D007400 ORTHO05D009351 1.3e-45 187.2 208 54.3
FvH4_4g09390 Fragaria vesca HOM05D007400 ORTHO05D009351 3.9e-45 185.7 208 53.8
MD00G1111500 Malus domestica HOM05D007400 ORTHO05D009351 6.7e-45 184.9 195 56.4
Lj2A352T41 Lonicera japonica HOM05D007400 ORTHO05D009351 8.7e-45 184.5 193 57.0
AT4G19830 Arabidopsis thaliana HOM05D007400 ORTHO05D009351 1.1e-44 184.1 155 61.9
CARHR226600 Cardamine hirsuta HOM05D007400 ORTHO05D009351 2.5e-44 183.0 155 61.9
BcaB03g11643 Brassica carinata HOM05D007400 ORTHO05D009351 3.3e-44 182.6 156 60.9
C03p82350 Brassica napus HOM05D007400 ORTHO05D009351 3.3e-44 182.6 206 53.4
unitig_61.g26077 Utricularia gibba HOM05D007400 ORTHO05D009351 3.3e-44 182.6 190 53.7
Cfa000725 Carpinus fangiana HOM05D007400 ORTHO05D009351 4.3e-44 182.2 201 53.2
CDE05G1756 Ceratophyllum demersum HOM05D007400 ORTHO05D009351 7.4e-44 181.4 160 63.1
CsaV3_1G046550 Cucumis sativus L. HOM05D007400 ORTHO05D009351 7.4e-44 181.4 188 57.4
CANSAT11G1633 Cannabis sativa HOM05D007400 ORTHO05D009351 9.6e-44 181.0 215 51.6
BcaC01g00636 Brassica carinata HOM05D007400 ORTHO05D009351 1.3e-43 180.6 206 52.4
A08p14510 Brassica napus HOM05D007400 ORTHO05D009351 1.3e-43 180.6 210 50.5
BolC3t20518H Brassica oleracea HOM05D007400 ORTHO05D009351 1.3e-43 180.6 206 52.4
BraA08t33439Z Brassica rapa HOM05D007400 ORTHO05D009351 1.3e-43 180.6 210 50.5
CiPaw.10G065400 Carya illinoinensis HOM05D007400 ORTHO05D009351 1.3e-43 180.6 185 56.8
Thhalv10026156m.g Eutrema salsugineum HOM05D007400 ORTHO05D009351 1.3e-43 180.6 186 54.3
Carub.0007s2138 Capsella rubella HOM05D007400 ORTHO05D009351 2.1e-43 179.9 213 49.8
GSVIVG01012101001 Vitis vinifera HOM05D007400 ORTHO05D009351 3.7e-43 179.1 168 59.5
Aa31LG6G2310 Aethionema arabicum HOM05D007400 ORTHO05D009351 4.8e-43 178.7 155 61.3
ClCG01G009370 Citrullus lanatus HOM05D007400 ORTHO05D009351 4.8e-43 178.7 188 56.4
arahy.Tifrunner.gnm1.ann1.ARB9WH Arachis hypogaea HOM05D007400 ORTHO05D009351 8.2e-43 177.9 206 51.5
THA.LOC104811504 Tarenaya hassleriana HOM05D007400 ORTHO05D009351 8.2e-43 177.9 158 61.4
arahy.Tifrunner.gnm1.ann1.L1RKW0 Arachis hypogaea HOM05D007400 ORTHO05D009351 1.1e-42 177.6 206 51.5
Actinidia11209 Actinidia chinensis HOM05D007400 ORTHO05D009351 1.4e-42 177.2 186 57.5
Sopen02g018260 Solanum pennellii HOM05D007400 ORTHO05D009351 2.4e-42 176.4 184 54.3
Hma1.2p1_0040F.1_g025040 Hydrangea macrophylla HOM05D007400 ORTHO05D009351 3.1e-42 176.0 210 51.9
Peaxi162Scf00149g01015 Petunia axillaris HOM05D007400 ORTHO05D009351 5.3e-42 175.3 210 52.9
Solyc02g069130.3 Solanum lycopersicum HOM05D007400 ORTHO05D009351 5.3e-42 175.3 208 51.4
Lj5g0000759 Lotus japonicus HOM05D007400 ORTHO05D009351 6.9e-42 174.9 185 56.2
TAR626G1335 Trochodendron aralioides HOM05D007400 ORTHO05D009351 1.2e-41 174.1 186 55.9
CAN.G1222.5 Capsicum annuum HOM05D007400 ORTHO05D009351 1.5e-41 173.7 207 51.7
Os02g0168700 Oryza sativa ssp. japonica HOM05D007400 ORTHO05D009351 1.5e-41 173.7 148 62.8
TWI63G0941 Tripterygium wilfordii HOM05D007400 ORTHO05D009351 1.5e-41 173.7 203 52.7
Glyma.10G066600 Glycine max HOM05D007400 ORTHO05D009351 2.0e-41 173.3 212 52.4
Sp7g18330 Schrenkiella parvula HOM05D007400 ORTHO05D009351 2.0e-41 173.3 212 47.2
vmacro11006 Vaccinium macrocarpon HOM05D007400 ORTHO05D009351 2.0e-41 173.3 226 51.8
Eucgr.E01894 Eucalyptus grandis HOM05D007400 ORTHO05D009351 2.6e-41 172.9 178 56.2
Nn7g38084 Nelumbo nucifera HOM05D007400 ORTHO05D009351 2.6e-41 172.9 181 58.0
MELO3C021776.2 Cucumis melo HOM05D007400 ORTHO05D009351 3.4e-41 172.6 199 54.3
Medtr1g061080 Medicago truncatula HOM05D007400 ORTHO05D009351 3.4e-41 172.6 207 51.2
AUR62011827 Chenopodium quinoa HOM05D007400 ORTHO05D009351 4.5e-41 172.2 179 55.9
Ciclev10016614m.g Citrus clementina HOM05D007400 ORTHO05D009351 4.5e-41 172.2 149 63.1
Cpa.g.sc135.34 Carica papaya HOM05D007400 ORTHO05D009351 7.6e-41 171.4 185 54.6
Lalb_Chr09g0328751 Lupinus albus HOM05D007400 ORTHO05D009351 1.0e-40 171.0 199 52.3
TPR.G5680 Trifolium pratense HOM05D007400 ORTHO05D009351 1.0e-40 171.0 211 53.1
Cc11_g00930 Coffea canephora HOM05D007400 ORTHO05D009351 1.3e-40 170.6 223 48.4
Duzib192G0901 Durio zibethinus HOM05D007400 ORTHO05D009351 1.3e-40 170.6 201 51.7
VMungo0720G1846 Vigna mungo HOM05D007400 ORTHO05D009351 1.3e-40 170.6 207 52.2
Haze_06019 Corylus avellana HOM05D007400 ORTHO05D009351 1.7e-40 170.2 218 50.0
Phvul.007G223000 Phaseolus vulgaris HOM05D007400 ORTHO05D009351 2.2e-40 169.9 198 53.5
DCAR_003791 Daucus carota HOM05D007400 ORTHO05D009351 2.9e-40 169.5 207 51.2
Gorai.009G151100 Gossypium raimondii HOM05D007400 ORTHO05D009351 2.9e-40 169.5 149 62.4
HanXRQChr15g0487331 Helianthus annuus HOM05D007400 ORTHO05D009351 2.9e-40 169.5 201 52.7
Zm00001eb207360 Zea mays HOM05D007400 ORTHO05D009351 3.8e-40 169.1 148 61.5
Gohir.A05G144700 Gossypium hirsutum HOM05D007400 ORTHO05D009351 5.0e-40 168.7 148 62.8
Lsat_1_v5_gn_8_117760 Lactuca sativa HOM05D007400 ORTHO05D009351 5.0e-40 168.7 225 48.9
Gohir.D05G147100 Gossypium hirsutum HOM05D007400 ORTHO05D009351 6.5e-40 168.3 149 61.7
ECA232G4176 Erigeron canadensis HOM05D007400 ORTHO05D009351 1.4e-39 167.2 186 52.2
Sed0027636 Sechium edule HOM05D007400 ORTHO05D009351 2.5e-39 166.4 187 54.5
PGR042G1002 Punica granatum HOM05D007400 ORTHO05D009351 4.2e-39 165.6 210 49.5
Atru.chr10.612 Acer truncatum HOM05D007400 ORTHO05D009351 9.3e-39 164.5 187 54.5
Manes.16G059200 Manihot esculenta HOM05D007400 ORTHO05D009351 1.2e-38 164.1 252 44.4
PSO675G6700 Papaver somniferum HOM05D007400 ORTHO05D009351 1.3e-37 160.6 215 51.2
ATR0763G247 Amborella trichopoda HOM05D007400 ORTHO05D009351 2.3e-37 159.8 211 47.9
EL10As5g23512 Beta vulgaris HOM05D007400 ORTHO05D009351 8.7e-37 157.9 193 51.3
Pp3c2_2300 Physcomitrium patens HOM05D007400 ORTHO05D009351 3.3e-36 156.0 149 59.7
AUR62024671 Chenopodium quinoa HOM05D007400 ORTHO05D009351 5.7e-36 155.2 174 52.9
SMO270G0023 Selaginella moellendorffii HOM05D007400 ORTHO05D009351 2.2e-35 153.3 146 54.1
Ca_11627_v3 Cicer arietinum L. HOM05D007400 ORTHO05D009351 1.1e-34 151.0 186 52.2
Mapoly0025s0105 Marchantia polymorpha HOM05D007400 ORTHO05D009351 1.8e-34 150.2 188 47.9
QL11p018093 Quercus lobata HOM05D007400 ORTHO05D009351 9.1e-34 147.9 78 92.3
CSS0009058 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 5.9e-33 145.2 78 89.7
AagrBONN_evm.TU.Sc2ySwM_344.2066 Anthoceros agrestis HOM05D003486 ORTHO05D004600 1.3e-32 144.1 156 50.0
Thecc.06G140800 Theobroma cacao HOM05D007400 ORTHO05D009351 3.8e-32 142.5 78 89.7
CSS0000937 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 6.5e-32 141.7 78 88.5
Migut.C00263 Erythranthe guttata HOM05D007400 ORTHO05D009351 1.9e-31 140.2 79 86.1
Ah.02g112190 Amaranthus hybridus HOM05D007400 ORTHO05D009351 3.2e-31 139.4 77 85.7
MBI09_g28984_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 4.2e-31 139.0 214 44.4
Nitab4.5_0017218g0010 Nicotiana tabacum HOM05D007400 ORTHO05D009351 1.6e-30 137.1 74 89.2
Sc05g0000500 Simmondsia chinensis HOM05D007400 ORTHO05D009351 1.4e-29 134.0 76 84.2
CSS0044125 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 6.7e-29 131.7 158 53.2
MBI09_g37060_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 1.3e-27 127.5 125 58.4
PSO675G3258 Papaver somniferum HOM05D007400 ORTHO05D009351 1.1e-23 114.4 135 51.9
Dinv04112 Davidia involucrata HOM05D007400 ORTHO05D009351 2.5e-23 113.2 168 48.2
FAN12G2033 Fragaria x ananassa HOM05D007400 ORTHO05D009351 3.2e-23 112.8 170 45.9
CSS0019726 Camellia sinensis var. sinensis HOM05D007400 ORTHO05D009351 4.2e-23 112.5 148 50.0
Rhsim02G0169200 Rhododendron simsii HOM05D007400 ORTHO05D009351 2.1e-22 110.2 258 33.7
AL7G34250 Arabidopsis lyrata HOM05D007400 ORTHO05D009351 2.7e-22 109.8 117 52.1
Prupe.1G087100 Prunus persica HOM05D007400 ORTHO05D009351 1.0e-21 107.8 155 45.2
Psat6g078400 Pisum sativum HOM05D007400 ORTHO05D009351 2.3e-21 106.7 151 45.7
COL.COLO4_30978 Corchorus olitorius HOM05D000065 ORTHO05D001606 5.7e-20 102.1 170 42.9
Sabra12G0089100 Salix brachista HOM05D007400 ORTHO05D009351 1.7e-19 100.5 218 38.1
MBI08_g39084_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 5.0e-16 89.0 194 38.1
AL7G34270 Arabidopsis lyrata HOM05D000741 ORTHO05D000506 2.5e-15 86.7 110 48.2
MBI03_g31611_MAGBIO Magnolia biondii HOM05D007400 ORTHO05D009351 1.6e-09 67.4 35 91.4
Glyma.18G074000 Glycine max HOM05D007127 ORTHO05D008803 2.0e-09 67.0 153 30.1
C02p06120 Brassica napus HOM05D002468 ORTHO05D009172 1.0e-08 64.7 164 30.5
BolC2t06553H Brassica oleracea HOM05D002468 ORTHO05D009172 1.0e-08 64.7 164 30.5
BcaNung01157 Brassica carinata HOM05D002468 ORTHO05D009172 2.2e-08 63.5 164 31.1
BcaNung01882 Brassica carinata HOM05D002468 ORTHO05D009172 2.9e-08 63.2 164 31.1
A02p01900 Brassica napus HOM05D002468 ORTHO05D009172 5.0e-08 62.4 164 30.5
BraA02t05163Z Brassica rapa HOM05D002468 ORTHO05D009172 5.0e-08 62.4 164 30.5
Hma1.2p1_1436F.1_g283230 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 5.0e-08 62.4 158 31.0
Cc11_g14950 Coffea canephora HOM05D002468 ORTHO05D009172 6.5e-08 62.0 220 29.1
SMO137G0309 Selaginella moellendorffii HOM05D002468 ORTHO05D009172 8.5e-08 61.6 170 32.9
MSTRG.8059 Avicennia marina HOM05D002468 ORTHO05D009172 1.1e-07 61.2 164 30.5
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 1.1e-07 61.2 229 31.4
CBR_g38077 Chara braunii HOM05D002468 ORTHO05D009172 1.5e-07 60.8 164 31.1
CARHR200020 Cardamine hirsuta HOM05D002468 ORTHO05D009172 1.9e-07 60.5 164 31.1
GSVIVG01014748001 Vitis vinifera HOM05D007127 ORTHO05D008803 1.9e-07 60.5 151 30.5
Actinidia30582 Actinidia chinensis HOM05D002468 ORTHO05D009172 2.5e-07 60.1 164 32.3
Aqoxy1G04096 Aquilegia oxysepala HOM05D007127 ORTHO05D008803 3.2e-07 59.7 183 25.7
AT3G10060 Arabidopsis thaliana HOM05D001775 ORTHO05D008700 3.2e-07 59.7 186 32.3
Thhalv10014743m.g Eutrema salsugineum HOM05D002468 ORTHO05D009172 3.2e-07 59.7 162 29.0
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.2e-07 59.3 164 31.1
DCAR_026442 Daucus carota HOM05D002468 ORTHO05D009172 4.2e-07 59.3 164 32.3
Gohir.D01G078500 Gossypium hirsutum HOM05D007127 ORTHO05D008803 4.2e-07 59.3 138 30.4
Thecc.02G191300 Theobroma cacao HOM05D002468 ORTHO05D009172 4.2e-07 59.3 164 31.1
Hma1.2p1_0193F.1_g083963 Hydrangea macrophylla HOM05D007127 ORTHO05D008803 5.5e-07 58.9 150 29.3
Sp6g30610 Schrenkiella parvula HOM05D002468 ORTHO05D009172 5.5e-07 58.9 164 29.9
Gohir.D04G141000 Gossypium hirsutum HOM05D002468 ORTHO05D009172 7.2e-07 58.5 164 30.5
Gorai.012G126000 Gossypium raimondii HOM05D002468 ORTHO05D009172 7.2e-07 58.5 164 30.5
AagrBONN_evm.TU.Sc2ySwM_368.1220 Anthoceros agrestis HOM05D007127 ORTHO05D008803 9.4e-07 58.2 151 28.5
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 9.4e-07 58.2 170 31.8
Eucgr.G01979 Eucalyptus grandis HOM05D002468 ORTHO05D009172 9.4e-07 58.2 164 29.9
Gohir.A01G094000 Gossypium hirsutum HOM05D007127 ORTHO05D008803 9.4e-07 58.2 138 30.4
Lj8A180T97 Lonicera japonica HOM05D007127 ORTHO05D008803 9.4e-07 58.2 150 30.0
vmacro01016 Vaccinium macrocarpon HOM05D002468 ORTHO05D009172 9.4e-07 58.2 164 30.5
Manes.08G100500 Manihot esculenta HOM05D002468 ORTHO05D009172 1.2e-06 57.8 164 31.1
Lj1g0015804 Lotus japonicus HOM05D002468 ORTHO05D009172 1.6e-06 57.4 162 31.5
Potri.001G467100 Populus trichocarpa HOM05D007127 ORTHO05D008803 1.6e-06 57.4 138 29.7
VMungo1383G2635 Vigna mungo HOM05D002468 ORTHO05D009172 1.6e-06 57.4 164 31.1
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 2.1e-06 57.0 172 32.0
Pp3c5_10020 Physcomitrium patens HOM05D007127 ORTHO05D008803 2.1e-06 57.0 189 27.5
GSVIVG01001099001 Vitis vinifera HOM05D002468 ORTHO05D009172 2.1e-06 57.0 170 30.6
FvH4_4g22550 Fragaria vesca HOM05D002468 ORTHO05D009172 2.7e-06 56.6 201 28.4
MD16G1141800 Malus domestica HOM05D002468 ORTHO05D009172 2.7e-06 56.6 161 30.4
Peaxi162Scf00339g00004 Petunia axillaris HOM05D007127 ORTHO05D008803 2.7e-06 56.6 183 28.4
PGR119G1456 Punica granatum HOM05D002468 ORTHO05D009172 2.7e-06 56.6 164 30.5
SGA_v2.0_scaffold171G38842 Striga asiatica HOM05D007127 ORTHO05D008803 2.7e-06 56.6 138 29.7
Ciclev10009425m.g Citrus clementina HOM05D007127 ORTHO05D008803 3.6e-06 56.2 138 29.7
Eucgr.F03672 Eucalyptus grandis HOM05D007127 ORTHO05D008803 3.6e-06 56.2 150 29.3
FAN25G0358 Fragaria x ananassa HOM05D007127 ORTHO05D008803 3.6e-06 56.2 150 27.3
Gorai.002G103100 Gossypium raimondii HOM05D007127 ORTHO05D008803 3.6e-06 56.2 138 29.7
PGR031G3625 Punica granatum HOM05D007127 ORTHO05D008803 3.6e-06 56.2 136 27.2
Sabra16G0317000 Salix brachista HOM05D007127 ORTHO05D008803 3.6e-06 56.2 136 28.7
SEGI_23050 Sequoiadendron giganteum HOM05D002468 ORTHO05D009172 3.6e-06 56.2 164 31.7
TPR.G17936 Trifolium pratense HOM05D007127 ORTHO05D008803 3.6e-06 56.2 151 25.8
Glyma.18G292600 Glycine max HOM05D002468 ORTHO05D009172 4.7e-06 55.8 170 30.6
Phvul.008G009400 Phaseolus vulgaris HOM05D002468 ORTHO05D009172 4.7e-06 55.8 170 30.6
Rhsim12G0017000 Rhododendron simsii HOM05D002468 ORTHO05D009172 4.7e-06 55.8 164 29.3
Solyc11g033284.1 Solanum lycopersicum HOM05D002468 ORTHO05D009172 4.7e-06 55.8 170 29.4
Aa31LG3G2590 Aethionema arabicum HOM05D001775 ORTHO05D008700 6.1e-06 55.5 168 31.5
Cfa009456 Carpinus fangiana HOM05D002468 ORTHO05D009172 6.1e-06 55.5 170 31.2
Peaxi162Scf00842g00418 Petunia axillaris HOM05D002468 ORTHO05D009172 6.1e-06 55.5 170 29.4
RcHm_v2.0_Chr4g0428781 Rosa chinensis HOM05D002468 ORTHO05D009172 6.1e-06 55.5 204 28.4
TAR622G1298 Trochodendron aralioides HOM05D002468 ORTHO05D009172 6.1e-06 55.5 196 28.6
Lj6g0006308 Lotus japonicus HOM05D007127 ORTHO05D008803 8.0e-06 55.1 138 27.5


User provided reference genes

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