Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 7.6e-262 906.7 448 100.0
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 9.6e-124 448.0 225 98.2
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 3.2e-95 353.2 212 80.7
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.2e-94 351.3 212 78.8
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 8.8e-93 345.1 210 79.0
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 3.3e-92 343.2 212 76.4
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 5.3e-90 335.9 239 68.6
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 9.1e-90 335.1 240 68.8
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.2e-89 334.7 209 75.6
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.5e-89 334.3 219 74.0
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 7.7e-89 332.0 242 69.0
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.3e-88 331.3 220 72.3
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.3e-88 331.3 208 75.0
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 6.5e-88 328.9 223 70.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.9e-87 327.4 234 67.9
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.5e-87 327.0 209 72.7
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 3.2e-87 326.6 208 73.6
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 3.2e-87 326.6 223 70.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 3.2e-87 326.6 217 72.4
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 5.5e-87 325.9 212 72.2
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 7.2e-87 325.5 209 74.6
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.2e-86 324.7 212 72.6
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.6e-86 324.3 223 70.9
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.1e-86 323.9 216 70.8
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.7e-86 323.6 244 66.8
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 6.1e-86 322.4 247 65.6
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.4e-85 321.2 244 66.8
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.3e-85 320.5 245 66.9
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 2.3e-85 320.5 207 70.5
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 2.3e-85 320.5 193 77.7
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 3.0e-85 320.1 241 66.4
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 5.2e-85 319.3 242 66.5
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 5.2e-85 319.3 233 66.5
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.2e-85 319.3 233 66.5
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.2e-85 319.3 233 66.5
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 8.8e-85 318.5 211 72.0
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 8.8e-85 318.5 236 66.1
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 2.0e-84 317.4 246 63.4
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.6e-84 317.0 212 72.6
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 5.7e-84 315.8 208 71.2
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 9.7e-84 315.1 193 76.2
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.3e-83 314.7 225 67.1
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.3e-83 314.7 201 74.1
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.3e-83 314.7 237 65.0
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.3e-83 314.7 221 67.0
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.7e-83 314.3 188 75.5
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.7e-83 314.3 204 72.5
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.2e-83 313.9 192 74.5
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.8e-83 313.5 210 71.4
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 4.8e-83 312.8 201 71.1
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 4.8e-83 312.8 199 74.4
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 6.3e-83 312.4 203 73.9
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 8.2e-83 312.0 188 74.5
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.1e-82 311.6 220 68.6
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-82 311.6 220 68.6
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.4e-82 311.2 223 68.2
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.8e-82 310.8 198 73.2
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 4.1e-82 309.7 189 74.1
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 4.1e-82 309.7 197 74.1
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 4.1e-82 309.7 197 74.1
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 4.1e-82 309.7 205 71.7
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 4.1e-82 309.7 192 74.0
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 5.3e-82 309.3 212 67.9
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.3e-82 309.3 202 71.3
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 9.1e-82 308.5 193 73.1
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 9.1e-82 308.5 207 70.0
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.2e-81 308.1 236 63.1
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.2e-81 308.1 219 68.0
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.6e-81 307.8 231 64.9
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.0e-81 307.4 209 67.9
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 2.0e-81 307.4 209 67.9
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 3.5e-81 306.6 232 65.5
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 3.5e-81 306.6 244 63.1
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.3e-80 304.7 193 73.6
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.3e-80 304.7 219 68.0
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.7e-80 304.3 177 80.2
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.7e-80 304.3 209 67.0
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 2.2e-80 303.9 194 74.2
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 3.8e-80 303.1 209 66.0
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.1e-79 301.6 212 67.5
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.1e-79 301.6 236 62.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.5e-79 301.2 209 66.5
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.9e-79 300.8 196 71.4
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 3.2e-79 300.1 196 69.9
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.2e-79 300.1 209 66.0
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 3.2e-79 300.1 189 72.5
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 9.4e-79 298.5 196 69.4
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 9.4e-79 298.5 196 69.4
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.2e-78 298.1 209 65.6
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.2e-78 298.1 209 65.6
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.6e-78 297.7 198 69.2
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.7e-78 297.0 196 70.4
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 4.7e-78 296.2 189 70.4
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 6.1e-78 295.8 196 70.9
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 6.1e-78 295.8 212 66.0
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 6.1e-78 295.8 227 61.7
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.3e-77 293.9 236 60.2
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.3e-77 293.9 280 55.0
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 2.3e-77 293.9 178 76.4
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 7.5e-76 288.9 222 63.1
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 2.0e-73 280.8 193 66.8
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 5.9e-73 279.3 245 60.4
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 5.9e-73 279.3 165 78.2
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.2e-72 277.3 436 41.3
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 4.2e-71 273.1 191 67.5
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 6.1e-70 269.2 199 67.3
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 6.3e-67 259.2 223 59.6
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 4.2e-63 246.5 139 81.3
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 2.3e-61 240.7 262 51.5
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.6e-60 237.3 130 84.6
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.8e-58 231.1 272 49.6
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 3.5e-57 226.9 217 52.1
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.8e-54 217.2 196 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.5e-52 211.5 179 53.6
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 4.4e-52 209.9 187 51.9
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.2e-49 201.8 193 54.9
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 3.9e-48 196.8 182 50.0
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 9.5e-47 192.2 111 81.1
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 4.7e-46 189.9 154 58.4
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 2.3e-45 187.6 176 49.4
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.7e-43 180.3 169 53.3
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.4e-42 178.3 227 44.1
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 5.4e-42 176.4 99 84.8
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 8.1e-38 162.5 153 56.2
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.8e-37 161.4 137 54.7
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.0e-37 160.2 93 80.6
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 8.9e-37 159.1 89 86.5
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 3.4e-36 157.1 92 78.3
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 4.4e-36 156.8 93 80.6
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 4.3e-31 140.2 155 51.0
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.1e-30 137.9 95 67.4
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.8e-29 134.8 80 81.2
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.0e-24 119.0 180 37.2
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 1.7e-24 118.2 95 57.9
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 3.3e-23 114.0 68 75.0
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 4.3e-23 113.6 88 61.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 4.3e-23 113.6 88 61.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 5.6e-23 113.2 91 61.5
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 9.6e-23 112.5 71 71.8
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.2e-22 112.1 100 59.0
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 4.0e-21 107.1 176 38.6
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 1.3e-19 102.1 88 52.3
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 6.0e-17 93.2 94 54.3
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 2.5e-15 87.8 82 50.0
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 2.8e-14 84.3 174 29.3
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 9.0e-13 79.3 49 73.5
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 2.0e-12 78.2 117 29.9
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 5.8e-12 76.6 108 43.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 1.3e-11 75.5 43 76.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 1.3e-11 75.5 43 76.7
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 7.1e-10 69.7 42 78.6
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 9.3e-10 69.3 106 38.7
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 6.0e-09 66.6 40 77.5
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 3.9e-08 63.9 55 54.5
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 5.1e-08 63.5 77 41.6
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 1.9e-07 61.6 34 76.5
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 1.9e-07 61.6 34 76.5
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 2.5e-07 61.2 39 66.7
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 4.3e-07 60.5 67 49.3
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 9.6e-07 59.3 72 43.1


User provided reference genes

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