Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold340G49317 Striga asiatica HOM05D003442 ORTHO05D004005 3.7e-70 268.1 134 100.0
Cc09_g04240 Coffea canephora HOM05D003442 ORTHO05D004005 2.3e-48 195.7 129 77.5
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 4.0e-48 194.9 124 79.8
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.5e-47 193.0 129 76.7
SalBow1G2470 Salvia bowleyana HOM05D003442 ORTHO05D004005 9.8e-47 190.3 102 91.2
SalBow1G3122 Salvia bowleyana HOM05D003442 ORTHO05D004005 9.8e-47 190.3 102 91.2
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 1.4e-45 186.4 129 73.6
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.4e-45 186.4 101 88.1
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.4e-45 185.7 111 80.2
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 2.4e-45 185.7 110 81.8
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 4.1e-45 184.9 101 87.1
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 5.4e-45 184.5 128 72.7
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 7.0e-45 184.1 129 72.9
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 7.0e-45 184.1 121 72.7
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 9.1e-45 183.7 132 73.5
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 1.6e-44 183.0 128 71.1
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 2.0e-44 182.6 129 72.1
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 2.0e-44 182.6 127 73.2
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 2.7e-44 182.2 128 71.1
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 4.5e-44 181.4 128 70.3
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 4.5e-44 181.4 125 73.6
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 4.5e-44 181.4 123 74.0
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 5.9e-44 181.0 110 80.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 5.9e-44 181.0 128 71.1
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 7.7e-44 180.6 129 71.3
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 1.0e-43 180.3 128 69.5
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 1.7e-43 179.5 101 85.1
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.7e-43 179.5 129 70.5
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 1.7e-43 179.5 101 85.1
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 2.3e-43 179.1 128 71.1
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.9e-43 178.7 128 69.5
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 2.9e-43 178.7 129 70.5
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 5.0e-43 177.9 127 69.3
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 6.6e-43 177.6 122 72.1
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 6.6e-43 177.6 101 84.2
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 8.6e-43 177.2 128 69.5
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 8.6e-43 177.2 124 68.5
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.5e-42 176.4 101 82.2
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 1.9e-42 176.0 128 70.3
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.3e-42 175.3 127 70.1
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.3e-42 175.3 127 70.1
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 3.3e-42 175.3 110 77.3
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 4.2e-42 174.9 101 80.2
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 4.2e-42 174.9 128 68.0
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 4.2e-42 174.9 127 70.1
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 4.2e-42 174.9 110 77.3
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 4.2e-42 174.9 128 70.3
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 5.6e-42 174.5 100 82.0
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 5.6e-42 174.5 101 82.2
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 7.2e-42 174.1 101 83.2
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 7.2e-42 174.1 101 83.2
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 7.2e-42 174.1 100 83.0
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 7.2e-42 174.1 110 76.4
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 7.2e-42 174.1 127 69.3
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 9.5e-42 173.7 128 66.4
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 9.5e-42 173.7 128 68.0
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.2e-41 173.3 127 68.5
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.2e-41 173.3 128 69.5
arahy.Tifrunner.gnm1.ann1.T9GKNP Arachis hypogaea HOM05D003442 ORTHO05D004005 1.6e-41 172.9 127 67.7
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 1.6e-41 172.9 127 67.7
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 1.6e-41 172.9 128 67.2
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.6e-41 172.9 100 83.0
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 2.1e-41 172.6 101 83.2
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.1e-41 172.6 100 81.0
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 3.6e-41 171.8 128 68.0
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 4.7e-41 171.4 128 68.8
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 4.7e-41 171.4 128 68.8
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 4.7e-41 171.4 128 69.5
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 6.1e-41 171.0 128 68.8
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 6.1e-41 171.0 128 68.8
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 6.1e-41 171.0 128 68.0
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 6.1e-41 171.0 101 81.2
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 8.0e-41 170.6 128 70.3
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.0e-41 170.6 128 67.2
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.0e-41 170.6 128 67.2
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 1.4e-40 169.9 128 68.0
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 1.8e-40 169.5 100 79.0
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 1.8e-40 169.5 128 68.0
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 1.8e-40 169.5 128 64.8
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.8e-40 169.5 110 75.5
Sabra13G0073800 Salix brachista HOM05D003442 ORTHO05D004005 1.8e-40 169.5 127 66.9
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 1.8e-40 169.5 125 72.8
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 2.3e-40 169.1 101 82.2
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 3.0e-40 168.7 127 67.7
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 3.0e-40 168.7 101 77.2
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 3.0e-40 168.7 128 65.6
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 4.0e-40 168.3 128 65.6
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 5.2e-40 167.9 111 74.8
Psat4g090720 Pisum sativum HOM05D003442 ORTHO05D004005 5.2e-40 167.9 127 65.4
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 5.2e-40 167.9 101 78.2
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 5.2e-40 167.9 101 81.2
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 6.8e-40 167.5 128 65.6
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 8.9e-40 167.2 127 64.6
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 1.2e-39 166.8 129 63.6
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 1.5e-39 166.4 128 67.2
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 2.6e-39 165.6 128 66.4
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 2.6e-39 165.6 128 66.4
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.6e-39 165.6 128 64.8
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 3.4e-39 165.2 128 67.2
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 3.4e-39 165.2 128 66.4
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 3.4e-39 165.2 128 66.4
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 3.4e-39 165.2 128 66.4
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 3.4e-39 165.2 128 66.4
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 3.4e-39 165.2 132 65.2
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 4.4e-39 164.9 100 79.0
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 5.7e-39 164.5 129 65.1
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 5.7e-39 164.5 128 61.7
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 7.5e-39 164.1 101 78.2
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 7.5e-39 164.1 107 73.8
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 7.5e-39 164.1 128 65.6
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 9.8e-39 163.7 128 65.6
Phvul.003G250866 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 9.8e-39 163.7 127 63.0
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 1.3e-38 163.3 120 69.2
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.7e-38 162.9 101 79.2
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 1.7e-38 162.9 128 65.6
VMungo0251G0407 Vigna mungo HOM05D003442 ORTHO05D004005 2.2e-38 162.5 100 75.0
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 4.9e-38 161.4 129 61.2
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 6.4e-38 161.0 124 63.7
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 8.3e-38 160.6 91 84.6
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.8e-37 159.5 139 61.9
TAR365G0520 Trochodendron aralioides HOM05D003442 ORTHO05D004005 3.2e-37 158.7 123 65.0
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 4.1e-37 158.3 101 75.2
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 5.4e-37 157.9 128 61.7
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 7.0e-37 157.5 90 84.4
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 7.0e-37 157.5 128 63.3
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 9.2e-37 157.1 90 83.3
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.2e-36 156.8 161 54.7
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 1.2e-36 156.8 130 62.3
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 2.0e-36 156.0 128 62.5
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 3.5e-36 155.2 134 61.2
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 5.9e-36 154.5 90 82.2
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 7.8e-36 154.1 105 77.1
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 2.3e-35 152.5 128 61.7
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 2.5e-34 149.1 90 80.0
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 2.5e-34 149.1 130 63.1
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 2.5e-34 149.1 128 60.2
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 9.5e-34 147.1 101 68.3
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.6e-33 146.4 102 68.6
Os07g0549700 Oryza sativa ssp. japonica HOM05D003442 ORTHO05D004005 2.8e-33 145.6 127 57.5
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 1.0e-32 143.7 120 65.0
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 5.2e-32 141.4 90 76.7
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 1.3e-30 136.7 111 63.1
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 1.3e-30 136.7 105 66.7
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 2.9e-30 135.6 101 65.3
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 4.9e-30 134.8 103 63.1
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 8.3e-30 134.0 76 82.9
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 1.1e-29 133.7 112 59.8
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 2.4e-29 132.5 101 64.4
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 2.4e-29 132.5 84 77.4
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 2.0e-28 129.4 103 66.0
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 6.0e-28 127.9 78 78.2
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 2.3e-27 125.9 111 58.6
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 6.2e-25 117.9 101 56.4
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.1e-24 117.1 75 77.3
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 6.4e-22 107.8 96 51.0
FvH4_5g39390 Fragaria vesca HOM05D003442 ORTHO05D004005 3.2e-21 105.5 91 59.3
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 9.2e-21 104.0 75 66.7
ATR0794G079 Amborella trichopoda HOM05D003442 ORTHO05D004005 4.0e-16 88.6 54 75.9
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 5.2e-16 88.2 48 93.8
SHI02590 Sapria himalayana HOM05D003442 ORTHO05D004005 4.9e-14 81.6 52 75.0
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 3.2e-13 79.0 59 64.4
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 5.4e-13 78.2 103 37.9
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.6e-12 76.6 93 46.2
SHI02591 Sapria himalayana HOM05D003442 ORTHO05D004005 3.9e-11 72.0 51 64.7
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 1.6e-09 66.6 98 40.8
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 2.1e-09 66.2 85 36.5


User provided reference genes

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