Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 0.0e+00 1490.7 843 100.0
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 7.7e-291 1003.8 834 72.5
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 2.2e-253 879.4 849 65.8
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 5.4e-244 848.2 845 65.4
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 7.6e-214 748.0 844 59.6
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 8.8e-194 681.4 825 56.7
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.1e-193 681.0 825 56.4
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 5.7e-193 678.7 825 56.5
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.6e-190 670.6 869 54.7
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 3.2e-188 662.9 844 55.3
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.3e-184 651.0 871 50.6
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.6e-182 644.0 847 53.7
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 7.7e-182 641.7 834 54.6
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.1e-180 637.9 829 55.7
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.2e-177 627.9 757 59.4
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 9.1e-175 618.2 831 52.9
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 6.6e-173 612.1 819 53.0
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.1e-172 611.3 830 53.6
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 3.3e-172 609.8 835 53.8
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.6e-171 607.4 829 53.3
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 3.6e-171 606.3 828 52.5
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 4.9e-168 595.9 876 47.3
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 7.8e-166 588.6 824 52.2
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.3e-165 587.8 824 52.2
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 3.3e-164 583.2 844 50.4
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 4.3e-164 582.8 837 50.1
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 5.6e-164 582.4 811 51.2
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 2.8e-163 580.1 836 50.5
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 6.8e-162 575.5 862 50.2
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 2.6e-161 573.5 829 51.0
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 5.8e-161 572.4 842 50.6
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 2.7e-158 563.5 810 48.8
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.7e-157 560.8 819 49.0
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 6.6e-157 558.9 804 48.9
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.5e-156 557.0 831 50.3
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.1e-155 553.9 818 49.4
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.8e-155 553.5 812 47.7
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 8.0e-155 552.0 801 49.1
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 1.4e-154 551.2 834 47.5
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.3e-154 550.4 812 51.2
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 4.0e-154 549.7 803 52.4
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 5.2e-154 549.3 801 43.9
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.2e-153 548.1 803 49.1
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 7.5e-153 545.4 823 44.0
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.9e-152 543.5 818 51.0
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 2.9e-152 543.5 831 49.3
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 3.7e-152 543.1 844 45.3
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 4.9e-152 542.7 819 51.2
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.1e-151 541.6 823 49.3
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.1e-151 541.6 824 47.3
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 4.1e-151 539.7 819 50.9
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 5.4e-151 539.3 909 44.2
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.6e-150 537.7 813 49.3
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 3.5e-150 536.6 834 47.8
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 6.0e-150 535.8 803 49.4
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 6.0e-150 535.8 815 44.9
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.0e-149 535.0 833 47.3
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.0e-149 535.0 781 50.1
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 2.3e-149 533.9 834 48.4
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.1e-149 532.7 819 48.0
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 8.6e-149 531.9 834 42.6
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 1.1e-148 531.6 831 50.9
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 3.6e-147 526.6 831 48.5
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 4.7e-147 526.2 830 43.1
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 6.2e-147 525.8 815 48.3
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.1e-146 525.0 833 42.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.8e-146 524.2 821 44.8
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 6.8e-146 522.3 784 51.0
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.2e-145 521.5 820 48.8
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 7.5e-145 518.8 838 43.3
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.2e-144 517.3 817 49.3
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.9e-144 516.9 817 49.2
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 4.9e-144 516.2 859 42.3
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 3.2e-143 513.5 802 44.8
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.2e-142 511.5 832 48.1
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.6e-142 511.1 844 49.5
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 3.5e-142 510.0 811 47.5
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 2.3e-141 507.3 842 48.6
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.1e-140 505.0 696 51.6
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 3.3e-140 503.4 810 48.5
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 7.3e-140 502.3 811 48.0
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 2.8e-139 500.4 810 46.4
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 4.7e-139 499.6 844 41.4
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 8.1e-139 498.8 812 46.8
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.4e-138 498.0 687 53.6
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 2.6e-137 493.8 799 46.8
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 3.4e-137 493.4 848 41.7
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 5.8e-137 492.7 857 43.4
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 5.4e-135 486.1 814 47.4
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 6.0e-134 482.6 813 47.4
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 5.6e-132 476.1 794 45.8
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 3.6e-131 473.4 817 46.4
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.4e-127 461.5 786 42.0
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 7.1e-127 459.1 689 49.9
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 2.3e-125 454.1 798 45.2
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 3.9e-125 453.4 798 45.2
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.5e-124 451.4 819 42.4
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 5.6e-124 449.5 819 42.2
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.4e-114 418.3 883 41.8
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 7.6e-113 412.5 504 48.8
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 1.4e-111 408.3 884 40.2
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 9.3e-111 405.6 850 39.5
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.3e-109 401.0 904 42.1
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 9.3e-103 379.0 868 39.7
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 5.1e-93 346.7 482 46.1
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.1e-92 345.5 755 42.0
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 8.2e-91 339.3 760 41.2
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 4.2e-87 327.0 768 35.4
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.4e-76 290.4 573 45.7
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 2.9e-72 277.7 855 36.5
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 4.0e-61 240.7 467 36.8
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 2.3e-56 224.9 244 49.6
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.9e-55 221.9 591 31.0
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 3.6e-54 217.6 495 34.5
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.2e-51 208.4 495 34.1
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.1e-46 191.8 827 31.0
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.9e-40 171.0 761 30.1
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 8.1e-38 163.3 458 31.9
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 1.1e-37 162.9 333 36.3
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 4.4e-36 157.5 203 47.8
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 1.3e-32 146.0 375 32.8
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.2e-30 139.4 111 62.2
MSTRG.340 Avicennia marina HOM05D005855 ORTHO05D006406 3.1e-29 134.8 129 57.4
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 6.8e-29 133.7 187 43.9
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 9.9e-28 129.8 179 44.7
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 2.5e-23 115.2 185 41.1
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 5.6e-23 114.0 164 41.5
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 2.0e-20 105.5 127 46.5
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 5.3e-13 80.9 76 51.3
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 1.1e-10 73.2 160 35.6
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 3.2e-10 71.6 82 47.6
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 9.3e-10 70.1 74 44.6
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.1e-09 68.9 109 41.3
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 5.6e-07 60.8 96 40.6
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 2.8e-06 58.5 71 49.3
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 4.8e-06 57.8 67 49.3
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 6.2e-06 57.4 69 50.7


User provided reference genes

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