Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 6.9e-76 287.7 205 100.0
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 7.0e-12 75.1 81 59.3
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.7e-10 70.5 67 61.2
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 2.9e-10 69.7 78 56.4
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 2.8e-08 63.2 67 53.7
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 2.8e-08 63.2 67 56.7
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 4.7e-08 62.4 81 49.4
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 6.1e-08 62.0 72 50.0
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 8.0e-08 61.6 67 53.7
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 1.0e-07 61.2 67 55.2
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.0e-07 61.2 67 55.2
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.0e-07 61.2 67 55.2
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.0e-07 61.2 67 55.2
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.8e-07 60.5 67 52.2
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.3e-07 60.1 67 55.2
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.3e-07 60.1 67 55.2
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 2.3e-07 60.1 66 53.0
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 2.3e-07 60.1 67 53.7
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 3.0e-07 59.7 66 54.5
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 4.0e-07 59.3 67 53.7
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 4.0e-07 59.3 67 50.7
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 4.0e-07 59.3 67 53.7
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 4.0e-07 59.3 86 46.5
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 4.0e-07 59.3 67 55.2
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 5.2e-07 58.9 66 51.5
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 6.8e-07 58.5 66 50.0
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 8.9e-07 58.2 81 44.4
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 8.9e-07 58.2 67 50.7
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 8.9e-07 58.2 67 52.2
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.2e-06 57.8 67 49.3
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.2e-06 57.8 66 51.5
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.2e-06 57.8 67 52.2
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.5e-06 57.4 63 52.4
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.5e-06 57.4 67 50.7
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.5e-06 57.4 67 50.7
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.5e-06 57.4 67 50.7
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.5e-06 57.4 66 53.0
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.0e-06 57.0 66 51.5
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.0e-06 57.0 67 49.3
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 2.0e-06 57.0 67 52.2
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.6e-06 56.6 67 52.2
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 3.4e-06 56.2 67 49.3
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 3.4e-06 56.2 67 50.7
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.4e-06 55.8 86 45.3
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 4.4e-06 55.8 63 54.0
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 4.4e-06 55.8 67 49.3
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 4.4e-06 55.8 67 49.3
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 4.4e-06 55.8 67 49.3
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 5.7e-06 55.5 67 49.3
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 5.7e-06 55.5 67 49.3
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 5.7e-06 55.5 86 45.3
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 5.7e-06 55.5 66 50.0
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 7.5e-06 55.1 67 50.7
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 7.5e-06 55.1 66 50.0
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 7.5e-06 55.1 71 47.9
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 9.8e-06 54.7 66 50.0
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 9.8e-06 54.7 67 49.3
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 9.8e-06 54.7 65 49.2
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 9.8e-06 54.7 67 50.7


User provided reference genes

Program Settings