Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 4.1e-113 411.4 205 100.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.2e-59 233.8 199 63.8
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.7e-58 229.9 198 62.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.8e-52 209.9 165 63.6
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.0e-51 206.5 196 58.2
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.6e-51 206.1 202 58.9
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.4e-51 205.7 194 62.4
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 3.4e-51 205.7 180 61.7
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.9e-51 204.9 162 65.4
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.0e-50 204.1 172 63.4
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.3e-50 203.8 140 73.6
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.7e-50 203.4 162 64.8
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 2.2e-50 203.0 196 56.1
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.9e-50 202.6 188 60.6
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.9e-50 202.6 161 67.1
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.2e-49 198.7 207 56.5
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.1e-48 196.4 162 64.2
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.7e-48 196.1 207 56.5
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 3.6e-48 195.7 203 53.7
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 3.6e-48 195.7 200 58.0
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 6.1e-48 194.9 171 62.0
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.0e-47 194.1 202 56.9
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.0e-47 194.1 171 61.4
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 3.0e-47 192.6 163 66.3
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 5.1e-47 191.8 137 71.5
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 5.1e-47 191.8 197 57.4
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 6.7e-47 191.4 199 52.3
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.7e-47 191.4 195 57.4
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 8.8e-47 191.0 162 62.3
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.5e-46 190.3 171 60.2
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.0e-46 189.9 157 66.9
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.0e-46 189.9 196 54.6
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.6e-46 189.5 178 59.6
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.6e-46 189.5 178 59.6
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.6e-46 189.5 178 59.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.6e-46 189.5 198 54.5
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.6e-46 189.5 158 67.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.4e-46 188.7 203 54.7
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 4.4e-46 188.7 106 85.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 4.4e-46 188.7 202 56.9
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 5.7e-46 188.3 197 53.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 9.7e-46 187.6 189 57.7
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 9.7e-46 187.6 199 55.8
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.3e-45 187.2 199 53.8
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.3e-45 187.2 162 58.6
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.3e-45 187.2 196 55.6
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.7e-45 186.8 210 52.9
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.8e-45 186.0 198 56.1
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.7e-45 185.7 177 57.6
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.7e-45 185.7 197 54.8
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 8.2e-45 184.5 137 69.3
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.1e-44 184.1 174 58.0
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.4e-44 183.7 199 52.8
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 3.1e-44 182.6 200 52.5
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.3e-44 181.8 103 88.3
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 6.9e-44 181.4 201 52.2
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 9.1e-44 181.0 162 58.0
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 9.1e-44 181.0 165 61.2
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-43 180.6 200 54.5
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.5e-43 180.3 200 55.5
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.5e-43 180.3 168 61.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.0e-43 179.9 166 59.0
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 3.4e-43 179.1 174 53.4
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 4.5e-43 178.7 189 54.0
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 5.9e-43 178.3 161 58.4
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 5.9e-43 178.3 141 66.7
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 7.7e-43 177.9 163 60.1
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 7.7e-43 177.9 185 55.7
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.0e-42 177.6 196 49.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.0e-42 177.6 196 49.0
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-42 177.6 141 67.4
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.0e-42 177.6 141 67.4
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.0e-42 177.6 199 51.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.0e-42 177.6 128 69.5
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.3e-42 177.2 116 74.1
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.7e-42 176.8 172 55.2
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.2e-42 176.4 140 66.4
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.9e-42 176.0 161 58.4
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.9e-42 176.0 106 82.1
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.0e-42 175.3 141 66.0
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.0e-42 175.3 141 66.0
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 6.5e-42 174.9 141 66.0
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.5e-42 174.9 106 81.1
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 8.5e-42 174.5 137 65.0
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.4e-41 173.7 141 66.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.9e-41 173.3 141 64.5
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.9e-41 173.3 197 50.8
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-41 173.3 174 56.9
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 2.5e-41 172.9 158 57.6
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.2e-41 172.6 106 80.2
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.2e-41 172.2 106 80.2
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 7.2e-41 171.4 233 46.4
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.2e-40 170.6 104 78.8
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.2e-40 170.6 204 49.0
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.6e-40 170.2 141 66.0
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.6e-40 170.2 199 48.7
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 3.6e-40 169.1 102 78.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.6e-40 169.1 107 76.6
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 4.7e-40 168.7 183 54.6
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 6.1e-40 168.3 161 52.2
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 6.1e-40 168.3 126 68.3
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.4e-39 167.2 111 75.7
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.4e-39 167.2 143 60.8
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.8e-39 166.8 195 48.2
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 2.3e-39 166.4 111 76.6
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.3e-39 166.4 125 64.8
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 3.9e-39 165.6 167 51.5
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 3.9e-39 165.6 119 69.7
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 5.2e-39 165.2 140 60.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.2e-39 165.2 162 58.6
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 6.7e-39 164.9 149 57.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.1e-38 164.1 137 61.3
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.5e-38 163.7 196 47.4
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.5e-38 163.7 103 77.7
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 2.6e-38 162.9 96 81.2
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.6e-38 162.9 196 45.9
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.4e-38 162.2 103 76.7
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 5.7e-38 161.8 198 49.5
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.7e-38 161.0 134 60.4
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.7e-37 160.2 197 49.2
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.2e-37 159.8 103 76.7
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 4.8e-37 158.7 149 56.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.1e-36 157.5 134 60.4
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 3.1e-36 156.0 151 55.0
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.5e-35 152.5 158 55.1
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.5e-35 152.1 122 60.7
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.3e-34 150.6 128 60.2
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.8e-34 149.1 161 47.8
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 7.2e-33 144.8 126 57.9
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 5.2e-31 138.7 143 51.7
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.5e-30 137.1 102 61.8
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.3e-30 136.0 102 61.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.4e-30 135.6 102 61.8
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 4.4e-30 135.6 82 76.8
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 4.4e-30 135.6 180 47.2
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 2.0e-27 126.7 102 54.9
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 6.8e-23 111.7 79 63.3
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.0e-18 97.8 107 52.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 3.8e-18 95.9 200 39.5
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-16 90.5 179 35.8
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.5e-14 84.0 106 49.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 3.4e-14 82.8 126 40.5
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.7e-13 80.5 82 53.7
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.8e-12 77.0 121 43.0
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 3.5e-11 72.8 102 45.1
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 3.0e-07 59.7 98 35.7
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.0e-07 59.7 101 31.7
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 4.0e-07 59.3 112 31.2
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.0e-07 59.3 93 39.8
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.0e-07 59.3 111 32.4


User provided reference genes

Program Settings