Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 2.0e-178 629.0 328 100.0
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 2.4e-70 270.0 247 64.0
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.5e-69 267.3 324 54.3
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.4e-61 239.6 350 49.4
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 5.9e-61 238.8 334 49.7
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.7e-61 238.4 339 48.7
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.1e-59 234.6 307 51.1
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.1e-59 234.6 339 49.0
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.2e-59 233.0 315 50.8
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 5.5e-59 232.3 227 61.2
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.8e-57 227.3 260 56.5
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 3.0e-57 226.5 227 59.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.3e-56 223.0 347 46.1
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.7e-55 220.7 321 47.4
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 3.7e-55 219.5 344 46.2
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 4.8e-55 219.2 345 46.4
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 5.3e-54 215.7 325 47.7
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.0e-53 213.8 255 58.4
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 4.5e-53 212.6 351 43.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.3e-52 211.1 251 52.6
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.3e-52 211.1 261 56.3
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.7e-52 210.7 300 49.7
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.7e-52 210.7 325 47.4
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 5.0e-52 209.1 261 55.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 6.5e-52 208.8 276 50.0
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 8.5e-52 208.4 311 46.9
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.4e-51 207.6 254 50.0
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.4e-51 207.6 304 48.0
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 2.5e-51 206.8 234 54.7
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.2e-51 206.1 315 49.8
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 5.5e-51 205.7 318 49.7
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 5.5e-51 205.7 315 46.3
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 7.2e-51 205.3 229 57.2
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 7.2e-51 205.3 264 53.0
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.2e-50 204.5 324 45.4
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.7e-50 203.4 305 46.6
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 2.7e-50 203.4 227 55.9
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.7e-50 202.6 323 45.8
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.7e-50 202.6 227 55.5
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 4.7e-50 202.6 228 56.1
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 6.1e-50 202.2 291 47.1
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 6.1e-50 202.2 322 45.0
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.0e-49 201.4 292 47.6
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.4e-49 201.1 322 46.9
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.8e-49 200.7 227 55.1
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.8e-49 200.7 313 45.4
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.0e-49 199.9 305 45.2
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 3.9e-49 199.5 249 54.6
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 3.9e-49 199.5 321 43.9
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 5.2e-49 199.1 323 42.7
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.7e-49 198.7 227 55.1
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.1e-48 198.0 222 54.5
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.1e-48 198.0 306 46.4
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.1e-48 198.0 323 42.7
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.6e-48 196.8 311 46.0
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.6e-48 196.8 257 53.7
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.3e-48 196.4 261 51.0
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 5.7e-48 195.7 327 45.6
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 7.4e-48 195.3 326 43.6
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 9.7e-48 194.9 303 44.6
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.7e-47 194.1 344 45.1
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.2e-47 193.7 325 41.5
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 3.7e-47 193.0 324 42.9
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 4.8e-47 192.6 329 41.3
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 6.3e-47 192.2 310 44.8
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 6.3e-47 192.2 310 44.8
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 6.3e-47 192.2 312 42.9
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.4e-46 191.0 325 44.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.8e-46 190.7 231 55.0
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.1e-46 189.9 349 42.1
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 3.1e-46 189.9 277 46.9
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 4.1e-46 189.5 292 46.2
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 4.1e-46 189.5 317 43.8
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 7.0e-46 188.7 211 54.5
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 2.0e-45 187.2 320 43.8
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.6e-45 186.8 257 52.1
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 2.6e-45 186.8 292 45.5
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 4.5e-45 186.0 321 43.9
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.5e-45 186.0 317 43.5
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 5.9e-45 185.7 315 41.9
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 7.7e-45 185.3 268 49.6
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.0e-44 184.9 318 44.0
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.0e-44 184.9 283 49.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.3e-44 184.5 267 47.6
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.7e-44 184.1 197 51.8
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 5.0e-44 182.6 305 43.3
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 5.0e-44 182.6 275 46.5
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.9e-43 180.6 318 43.4
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.2e-42 177.9 266 45.9
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.6e-42 177.6 275 46.5
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 1.6e-42 177.6 316 40.5
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.6e-42 177.6 163 57.1
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 2.7e-42 176.8 304 42.1
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.7e-42 176.8 271 46.5
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 6.1e-42 175.6 327 41.0
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 6.1e-42 175.6 306 43.1
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.0e-41 174.9 252 48.0
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.8e-41 174.1 300 44.7
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 2.3e-41 173.7 279 44.8
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.0e-41 172.9 322 42.2
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.0e-41 172.9 310 43.2
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.0e-41 172.9 304 44.4
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.2e-40 171.4 349 40.4
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.5e-40 171.0 260 45.0
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 3.3e-40 169.9 307 42.0
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 9.7e-40 168.3 310 42.6
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 9.7e-40 168.3 282 47.2
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 3.7e-39 166.4 230 46.1
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.7e-39 166.4 281 46.3
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 6.3e-39 165.6 295 42.7
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.1e-38 164.9 313 40.6
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 2.4e-38 163.7 268 44.8
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 2.4e-38 163.7 268 44.8
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 4.1e-38 162.9 241 48.1
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 9.1e-38 161.8 306 41.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.7e-37 160.2 299 39.8
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.7e-37 160.2 263 44.9
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 3.5e-37 159.8 244 46.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.5e-37 159.5 256 47.7
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 7.7e-37 158.7 263 43.7
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.0e-36 158.3 270 42.2
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-36 157.9 262 44.3
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-36 157.9 263 44.5
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-36 157.5 243 45.3
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-36 157.5 262 43.5
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 3.8e-36 156.4 249 46.6
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.1e-35 154.8 257 44.4
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.1e-35 154.8 302 41.4
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 1.9e-35 154.1 269 42.0
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.5e-35 153.7 274 43.4
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.5e-35 153.7 254 42.1
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 4.2e-35 152.9 274 43.1
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 4.2e-35 152.9 274 43.1
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 7.2e-35 152.1 259 44.8
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 3.6e-34 149.8 213 48.8
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 4.7e-34 149.4 273 41.8
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 6.1e-34 149.1 273 41.8
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 6.1e-34 149.1 286 41.3
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.4e-33 147.9 276 41.3
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.0e-33 146.4 264 42.8
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 6.8e-33 145.6 245 43.7
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.5e-32 144.4 339 37.8
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.6e-32 143.7 189 48.7
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 5.7e-32 142.5 289 40.8
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 9.8e-32 141.7 115 69.6
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 7.7e-29 132.1 268 41.0
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 2.9e-28 130.2 250 41.6
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.1e-27 128.3 303 37.3
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-25 121.3 263 38.8
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.4e-25 121.3 246 41.5
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 2.3e-25 120.6 300 35.3
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 2.3e-25 120.6 300 35.3
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.3e-25 120.6 117 61.5
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 5.2e-25 119.4 262 38.5
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 6.8e-25 119.0 194 42.8
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.2e-23 114.0 172 40.7
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 4.5e-21 106.3 299 34.4
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 5.6e-19 99.4 129 47.3
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 4.4e-16 89.7 163 42.3
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.8e-14 84.3 64 76.6
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 4.3e-11 73.2 90 46.7
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.0e-09 68.6 290 29.0


User provided reference genes

Program Settings