Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.1e-190 669.8 338 100.0
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.1e-150 537.0 335 79.1
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 5.9e-149 531.2 335 79.1
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 2.9e-148 528.9 333 78.1
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 3.6e-146 521.9 338 76.3
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 4.7e-146 521.5 322 78.0
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 6.7e-145 517.7 330 77.9
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.3e-144 515.4 331 76.4
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.3e-144 515.4 321 78.5
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 5.7e-144 514.6 321 78.2
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 7.5e-144 514.2 321 78.2
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.7e-144 513.8 331 76.4
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.7e-143 513.1 325 75.7
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.7e-143 513.1 331 76.4
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 1.7e-143 513.1 337 76.0
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 1.7e-143 513.1 330 76.1
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.2e-143 512.7 331 75.8
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.2e-143 512.7 332 75.0
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 3.7e-143 511.9 328 76.8
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.8e-143 511.5 338 74.6
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 6.3e-143 511.1 317 77.9
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.4e-142 510.0 328 76.5
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.4e-142 510.0 338 74.6
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.8e-142 509.6 332 74.7
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 5.3e-142 508.1 320 76.2
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 5.3e-142 508.1 333 74.8
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.0e-141 506.1 333 74.2
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.7e-141 505.8 328 74.7
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.5e-141 505.4 328 75.0
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 3.5e-141 505.4 331 74.0
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 4.5e-141 505.0 335 74.6
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 5.9e-141 504.6 326 75.8
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 5.9e-141 504.6 328 75.3
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 7.7e-141 504.2 329 75.1
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 7.7e-141 504.2 322 76.7
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.0e-140 503.8 332 73.2
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.3e-140 503.4 333 73.6
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.7e-140 503.1 369 70.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 2.2e-140 502.7 323 75.9
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 3.8e-140 501.9 339 74.3
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 6.5e-140 501.1 319 76.5
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 8.5e-140 500.7 340 73.2
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.5e-139 499.2 332 72.6
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 4.2e-139 498.4 335 73.7
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 4.2e-139 498.4 336 73.8
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 5.5e-139 498.0 332 73.5
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 5.5e-139 498.0 316 76.6
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.2e-138 496.9 319 74.3
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.2e-138 496.9 337 74.2
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.2e-138 496.9 380 67.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.1e-138 496.1 317 76.0
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.6e-138 495.4 336 72.6
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 3.6e-138 495.4 324 75.0
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 4.7e-138 495.0 330 73.6
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.4e-137 493.4 324 73.8
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.4e-137 493.4 324 74.7
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.8e-137 493.0 332 74.7
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 2.3e-137 492.7 339 72.3
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 4.0e-137 491.9 338 72.5
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.2e-136 490.3 341 71.3
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.5e-136 490.0 341 71.0
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-136 490.0 341 71.0
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.6e-136 489.2 343 72.6
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 3.4e-136 488.8 330 73.9
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 4.4e-136 488.4 340 72.4
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.3e-135 486.9 330 72.1
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.7e-135 486.5 332 72.9
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.2e-135 486.1 317 74.8
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 2.8e-135 485.7 337 72.4
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 2.8e-135 485.7 337 72.4
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.8e-135 485.7 337 71.8
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 4.8e-135 485.0 337 71.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 8.3e-135 484.2 367 66.2
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.1e-134 483.8 337 71.8
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 4.1e-134 481.9 373 65.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 5.4e-134 481.5 322 73.3
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 5.4e-134 481.5 320 74.1
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 7.0e-134 481.1 320 74.1
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 9.1e-134 480.7 332 72.0
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.1e-134 480.7 354 68.4
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.0e-133 479.6 319 74.3
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 3.5e-133 478.8 310 74.8
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 3.5e-133 478.8 319 75.9
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 1.0e-132 477.2 325 74.2
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.9e-132 475.7 318 73.6
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 3.8e-132 475.3 332 71.4
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.2e-131 472.2 354 67.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.0e-129 467.2 398 63.1
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.3e-129 466.1 337 71.2
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 7.0e-126 454.5 294 74.8
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.8e-124 448.7 332 69.3
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 9.5e-123 444.1 315 67.6
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 6.1e-122 441.4 343 65.0
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 8.0e-122 441.0 337 68.2
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 6.8e-121 438.0 349 65.6
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.3e-119 433.7 317 68.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.2e-117 427.2 322 64.9
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 5.6e-115 418.3 329 61.1
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 6.4e-111 404.8 247 79.8
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 7.8e-109 397.9 250 79.2
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.1e-106 389.8 242 76.9
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 4.7e-106 388.7 246 76.4
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.3e-105 386.3 247 75.3
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 5.4e-102 375.2 314 63.1
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.1e-101 373.2 366 56.8
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.0e-100 369.4 311 60.8
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.9e-99 366.7 244 73.8
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.2e-98 364.0 344 59.0
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 3.1e-97 359.4 328 57.9
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 8.9e-89 331.3 312 55.8
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 4.6e-85 318.9 190 78.4
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 1.8e-73 280.4 232 60.3
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 9.0e-73 278.1 323 46.7
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 6.9e-65 251.9 162 72.8
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 6.9e-65 251.9 263 49.4
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.6e-64 250.0 206 62.6
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.4e-62 244.2 309 45.6
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 7.6e-56 221.9 134 78.4
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 7.2e-54 215.3 138 73.9
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 4.6e-53 212.6 177 58.8
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.4e-49 201.1 127 75.6
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.9e-39 166.8 130 64.6
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 8.5e-39 165.2 130 63.8
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.7e-37 159.5 141 61.0
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 8.0e-37 158.7 120 65.0
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 1.1e-35 154.8 99 75.8
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-35 153.7 122 63.1
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-35 153.7 122 63.1
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-35 152.9 162 50.0
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 7.4e-35 152.1 122 62.3
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 9.7e-27 125.2 180 46.1
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.4e-25 121.3 105 58.1
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 7.7e-24 115.5 97 59.8
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 5.5e-22 109.4 73 74.0
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 5.5e-22 109.4 78 71.8
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.4e-20 104.8 73 69.9
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.2e-19 101.7 76 67.1
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.5e-19 99.0 67 74.6
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.2e-16 91.7 61 70.5
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 5.0e-15 86.3 65 69.2
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 8.6e-15 85.5 169 38.5
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.9e-14 84.3 66 65.2
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 5.2e-12 76.3 53 67.9
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 6.6e-07 59.3 56 60.7
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 3.3e-06 57.0 185 25.9
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 4.3e-06 56.6 76 50.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 7.3e-06 55.8 51 52.9


User provided reference genes

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