Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 6.9e-83 310.5 143 100.0
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 4.2e-64 248.1 141 80.9
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.9e-62 241.5 139 78.4
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 8.8e-62 240.4 139 77.0
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 2.8e-60 235.3 140 78.6
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.8e-59 232.6 138 78.3
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 5.3e-59 231.1 136 75.0
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 7.0e-59 230.7 142 76.8
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 2.6e-58 228.8 123 83.7
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 2.6e-58 228.8 140 77.1
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 3.5e-58 228.4 139 73.4
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 4.5e-58 228.0 138 76.8
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 5.9e-58 227.6 140 75.0
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 5.9e-58 227.6 139 74.8
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 7.7e-58 227.3 117 87.2
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.0e-57 226.9 118 83.9
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.3e-57 226.5 135 77.0
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.3e-57 226.5 139 73.4
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-57 226.5 144 72.9
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 1.3e-57 226.5 138 76.1
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.0e-57 224.6 128 78.1
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 5.0e-57 224.6 140 71.4
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 6.5e-57 224.2 128 79.7
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 6.5e-57 224.2 143 73.4
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 6.5e-57 224.2 143 73.4
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 8.5e-57 223.8 141 73.8
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.1e-56 223.4 136 75.0
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.1e-56 223.4 141 73.8
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.5e-56 222.2 126 78.6
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.5e-56 222.2 142 72.5
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 3.2e-56 221.9 126 77.8
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.2e-56 221.9 143 72.0
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 3.2e-56 221.9 138 76.1
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 3.2e-56 221.9 141 73.0
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 5.5e-56 221.1 135 73.3
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.2e-55 219.9 139 71.9
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.1e-55 219.2 144 70.1
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.7e-55 218.8 141 72.3
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 3.6e-55 218.4 140 70.0
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 4.7e-55 218.0 145 72.4
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 8.0e-55 217.2 140 71.4
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.0e-54 216.9 142 71.1
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.0e-54 216.9 119 81.5
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.4e-54 216.5 136 72.8
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 3.0e-54 215.3 125 74.4
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.0e-54 215.3 132 73.5
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 4.0e-54 214.9 138 71.0
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 5.2e-54 214.5 138 73.2
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 5.2e-54 214.5 124 77.4
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 8.8e-54 213.8 142 71.8
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.2e-53 213.4 122 80.3
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.6e-53 212.2 143 69.2
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 3.3e-53 211.8 137 72.3
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.4e-53 211.5 143 69.2
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 5.7e-53 211.1 143 69.9
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 1.3e-52 209.9 144 70.1
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 1.3e-52 209.9 142 69.0
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.2e-52 209.1 128 72.7
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.2e-52 209.1 135 69.6
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 2.2e-52 209.1 135 70.4
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.8e-52 208.8 131 74.0
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 3.7e-52 208.4 140 70.7
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 3.7e-52 208.4 136 71.3
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 4.8e-52 208.0 139 71.2
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 8.2e-52 207.2 121 75.2
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.1e-51 206.8 128 71.9
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.4e-51 206.5 134 68.7
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.4e-51 206.5 140 67.9
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 4.1e-51 204.9 145 68.3
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 5.3e-51 204.5 137 68.6
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.6e-50 203.0 117 75.2
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 2.0e-50 202.6 144 67.4
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 5.9e-50 201.1 138 66.7
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 5.9e-50 201.1 140 66.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 7.7e-50 200.7 134 68.7
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.7e-49 199.5 136 69.1
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 3.8e-49 198.4 134 66.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 5.0e-49 198.0 134 67.2
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 8.5e-49 197.2 137 65.7
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 8.5e-49 197.2 134 66.4
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 8.5e-49 197.2 134 66.4
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 8.5e-49 197.2 129 69.0
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.1e-48 196.8 130 66.9
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.1e-48 196.8 136 64.7
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.1e-48 196.8 119 73.1
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.1e-48 196.8 119 73.1
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 3.2e-48 195.3 134 65.7
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 7.2e-48 194.1 134 66.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.6e-47 193.0 146 64.4
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 2.7e-47 192.2 141 63.1
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 6.1e-47 191.0 116 75.0
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.0e-46 188.3 138 63.8
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 5.2e-46 188.0 165 55.2
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.0e-45 186.0 109 74.3
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 4.4e-45 184.9 136 64.0
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.7e-44 183.0 138 63.0
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 4.8e-44 181.4 137 66.4
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 4.1e-43 178.3 121 63.6
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 9.1e-43 177.2 130 61.5
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.7e-42 175.6 138 65.2
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 7.7e-42 174.1 82 93.9
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 9.2e-35 150.6 138 50.7
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 8.6e-33 144.1 117 54.7
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 4.3e-32 141.7 84 72.6
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 2.1e-31 139.4 116 61.2
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.0e-30 135.6 74 81.1
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.3e-28 130.2 118 47.5
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.7e-28 129.8 140 51.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-27 126.7 98 53.1
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.6e-26 123.2 74 73.0
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 3.9e-25 118.6 134 46.3
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.9e-24 116.3 90 56.7
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 4.3e-24 115.2 90 55.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 2.8e-23 112.5 117 51.3
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 3.1e-22 109.0 89 52.8
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-21 106.7 93 47.3
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 2.2e-20 102.8 57 80.7
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.6e-18 96.7 99 48.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 2.3e-17 92.8 92 46.7
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.1e-16 90.5 99 40.4
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.1e-15 86.3 62 64.5
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-13 80.1 67 55.2
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.3e-12 77.0 62 59.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 2.2e-12 76.3 57 59.6
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 3.0e-09 65.9 70 45.7
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 2.5e-08 62.8 53 58.5
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 2.1e-07 59.7 52 57.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.1e-07 59.7 41 63.4
GSVIVG01029385001 Vitis vinifera HOM05D005641 ORTHO05D007953 5.2e-06 55.1 32 71.9
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 6.8e-06 54.7 86 38.4


User provided reference genes

Program Settings