Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 5.6e-72 274.2 145 100.0
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 2.8e-47 192.2 126 70.6
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 6.2e-47 191.0 126 69.0
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 1.1e-46 190.3 126 69.8
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 1.4e-46 189.9 125 72.8
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 2.4e-46 189.1 123 71.5
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 2.4e-46 189.1 123 71.5
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 6.9e-46 187.6 130 66.2
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 9.0e-46 187.2 130 70.0
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 9.0e-46 187.2 126 67.5
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 1.2e-45 186.8 126 66.7
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 2.6e-45 185.7 126 68.3
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 9.9e-45 183.7 124 67.7
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 1.3e-44 183.3 126 69.0
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 1.7e-44 183.0 127 69.3
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 1.7e-44 183.0 127 67.7
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 2.9e-44 182.2 127 68.5
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 2.9e-44 182.2 132 68.9
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 3.8e-44 181.8 122 68.9
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 4.9e-44 181.4 123 68.3
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 6.4e-44 181.0 130 66.9
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 8.4e-44 180.6 132 64.4
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.1e-43 180.3 126 65.9
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 1.1e-43 180.3 115 73.0
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 1.1e-43 180.3 123 68.3
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 2.4e-43 179.1 127 68.5
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 2.4e-43 179.1 127 66.1
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 3.2e-43 178.7 125 68.0
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 3.2e-43 178.7 126 64.3
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 3.2e-43 178.7 127 67.7
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 3.2e-43 178.7 100 79.0
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 4.2e-43 178.3 128 64.1
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 5.4e-43 177.9 133 64.7
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 7.1e-43 177.6 126 64.3
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 1.2e-42 176.8 132 65.2
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.2e-42 176.8 132 65.2
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 1.6e-42 176.4 130 63.8
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 2.7e-42 175.6 119 69.7
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 3.5e-42 175.3 100 78.0
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 3.5e-42 175.3 127 66.9
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 4.6e-42 174.9 128 66.4
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 4.6e-42 174.9 135 63.0
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 6.0e-42 174.5 130 62.3
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 6.0e-42 174.5 130 63.1
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 6.0e-42 174.5 131 63.4
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 6.0e-42 174.5 113 69.9
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 7.8e-42 174.1 131 63.4
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 7.8e-42 174.1 132 62.9
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 7.8e-42 174.1 124 66.9
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 1.0e-41 173.7 130 64.6
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 1.3e-41 173.3 130 62.3
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 1.3e-41 173.3 130 62.3
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 1.3e-41 173.3 130 62.3
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 1.3e-41 173.3 130 62.3
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 1.3e-41 173.3 126 64.3
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 1.3e-41 173.3 130 62.3
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.3e-41 173.3 127 64.6
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 1.3e-41 173.3 127 64.6
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 1.7e-41 172.9 127 63.8
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 2.3e-41 172.6 127 64.6
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 3.9e-41 171.8 133 60.2
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 5.1e-41 171.4 130 62.3
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 5.1e-41 171.4 114 67.5
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 5.1e-41 171.4 119 65.5
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 5.1e-41 171.4 119 65.5
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 5.1e-41 171.4 127 63.0
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 6.6e-41 171.0 100 76.0
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 6.6e-41 171.0 132 59.8
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 8.7e-41 170.6 131 64.9
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 8.7e-41 170.6 121 63.6
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 1.1e-40 170.2 130 60.8
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 1.1e-40 170.2 130 61.5
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 1.1e-40 170.2 132 60.6
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.1e-40 170.2 127 63.8
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 1.5e-40 169.9 132 59.8
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.3e-40 168.3 127 60.6
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 5.6e-40 167.9 127 65.4
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 7.3e-40 167.5 127 65.4
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 9.6e-40 167.2 130 61.5
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.3e-39 166.8 127 59.8
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 1.3e-39 166.8 123 65.0
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 1.6e-39 166.4 131 59.5
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 2.8e-39 165.6 97 77.3
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 2.8e-39 165.6 97 77.3
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 8.1e-39 164.1 110 67.3
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 1.1e-38 163.7 100 73.0
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 1.4e-38 163.3 148 55.4
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 2.4e-38 162.5 121 65.3
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 9.0e-38 160.6 100 72.0
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 2.0e-37 159.5 100 72.0
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 2.6e-37 159.1 132 59.1
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 4.5e-37 158.3 99 71.7
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 4.5e-37 158.3 100 71.0
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 5.8e-37 157.9 100 70.0
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 5.8e-37 157.9 123 63.4
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 9.9e-37 157.1 98 71.4
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 1.3e-36 156.8 131 59.5
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 1.3e-36 156.8 169 50.9
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 1.7e-36 156.4 129 56.6
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 3.8e-36 155.2 119 63.0
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 6.4e-36 154.5 100 69.0
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 3.2e-35 152.1 107 66.4
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 3.2e-35 152.1 100 68.0
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 4.2e-35 151.8 100 68.0
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 7.1e-35 151.0 173 46.2
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 2.7e-34 149.1 118 60.2
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 3.5e-34 148.7 112 60.7
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 3.5e-34 148.7 127 56.7
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 2.3e-33 146.0 117 59.0
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 3.0e-33 145.6 100 65.0
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 6.7e-33 144.4 107 66.4
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 4.8e-31 138.3 84 70.2
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 1.8e-30 136.3 99 61.6
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 2.4e-30 136.0 132 50.0
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.1e-30 135.6 119 55.5
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 1.4e-27 126.7 97 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 2.4e-27 125.9 105 54.3
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 9.3e-27 124.0 61 96.7
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.0e-25 120.6 84 63.1
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 8.7e-25 117.5 103 50.5
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 1.4e-22 110.2 97 48.5
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 1.2e-21 107.1 61 75.4
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 8.4e-20 100.9 98 48.0
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 8.4e-20 100.9 61 72.1
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.2e-18 97.1 86 55.8
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 1.6e-18 96.7 85 51.8
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 3.4e-13 79.0 57 57.9
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 1.7e-12 76.6 49 71.4
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 5.0e-12 75.1 85 48.2
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.4e-11 73.6 67 53.7
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.5e-11 72.8 49 65.3
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 4.2e-11 72.0 65 58.5
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 9.4e-11 70.9 96 35.4
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 3.6e-10 68.9 63 55.6
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 6.1e-10 68.2 73 52.1
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 3.9e-09 65.5 66 53.0
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 5.1e-09 65.1 101 30.7
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 6.3e-07 58.2 34 70.6


User provided reference genes

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