Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 4.6e-164 581.3 311 100.0
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 4.1e-80 302.4 319 59.9
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.6e-68 262.7 311 55.3
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 3.4e-66 256.1 318 56.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 7.5e-66 255.0 318 53.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.4e-64 250.0 292 55.8
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.1e-64 249.2 292 55.8
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.7e-63 246.5 310 53.9
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.3e-61 239.2 316 53.2
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.0e-55 220.3 320 49.1
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.0e-55 220.3 302 51.0
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 6.0e-55 218.8 304 49.7
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.3e-54 217.6 298 48.7
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.7e-54 217.2 313 47.9
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 3.0e-54 216.5 300 50.0
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 6.6e-54 215.3 356 44.9
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 3.3e-53 213.0 297 47.5
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.2e-52 211.1 307 48.9
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 3.1e-51 206.5 288 52.1
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 1.2e-50 204.5 223 58.7
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 2.0e-50 203.8 286 52.4
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 2.0e-50 203.8 223 57.0
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.6e-50 203.4 295 48.5
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.6e-50 203.4 272 48.2
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 5.8e-50 202.2 295 48.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 5.8e-50 202.2 208 59.1
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 5.8e-50 202.2 409 39.6
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 9.8e-50 201.4 210 58.6
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 9.8e-50 201.4 203 61.6
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.3e-49 201.1 314 45.9
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.3e-49 201.1 293 48.5
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 2.2e-49 200.3 210 58.6
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 2.9e-49 199.9 210 60.5
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 2.9e-49 199.9 210 60.5
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.7e-49 199.5 255 52.2
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 8.3e-49 198.4 216 58.3
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 8.3e-49 198.4 299 48.2
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.1e-48 198.0 291 46.7
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-48 197.6 218 57.8
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 3.2e-48 196.4 265 51.7
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 4.1e-48 196.1 218 57.3
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 5.4e-48 195.7 220 56.4
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 5.4e-48 195.7 314 43.3
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 9.2e-48 194.9 210 57.1
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 9.2e-48 194.9 210 57.6
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 3.5e-47 193.0 196 60.7
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 3.5e-47 193.0 256 52.3
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.8e-47 191.8 313 47.0
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 7.8e-47 191.8 206 58.7
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.7e-46 190.7 210 57.1
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 5.1e-46 189.1 305 45.2
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.1e-46 189.1 225 55.6
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.1e-45 188.0 223 53.4
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.5e-45 187.6 246 50.0
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.9e-45 187.2 217 55.8
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.5e-45 186.8 221 55.2
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 2.5e-45 186.8 280 47.1
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.3e-45 186.4 316 44.3
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 7.3e-45 185.3 160 68.1
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 9.5e-45 184.9 228 56.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.6e-44 184.1 200 57.5
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.6e-44 184.1 240 52.9
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.6e-44 184.1 267 51.3
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 3.6e-44 183.0 208 56.7
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 3.6e-44 183.0 281 47.3
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.7e-44 182.6 154 67.5
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.1e-43 181.4 204 57.8
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.1e-43 181.4 201 57.2
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 3.1e-43 179.9 213 55.9
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 4.0e-43 179.5 256 49.2
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 5.2e-43 179.1 155 67.7
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 5.2e-43 179.1 225 52.0
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 6.8e-43 178.7 223 55.6
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 6.8e-43 178.7 227 55.1
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.2e-42 177.9 210 55.7
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 2.0e-42 177.2 223 55.6
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 2.0e-42 177.2 189 60.3
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.0e-42 177.2 203 55.7
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 2.6e-42 176.8 216 55.1
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.6e-42 176.8 265 48.7
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 4.4e-42 176.0 201 56.2
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 5.8e-42 175.6 292 45.2
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 7.6e-42 175.3 227 52.0
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 7.6e-42 175.3 229 52.4
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 9.9e-42 174.9 215 54.0
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.3e-41 174.5 219 52.1
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.3e-41 174.5 201 55.7
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.3e-41 174.5 219 52.1
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.3e-41 174.5 196 57.1
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.7e-41 174.1 227 51.5
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 2.2e-41 173.7 206 54.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 2.9e-41 173.3 286 44.1
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.7e-41 172.9 203 55.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 6.4e-41 172.2 203 54.7
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.1e-40 171.4 274 44.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 5.4e-40 169.1 225 51.6
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 4.6e-39 166.0 274 43.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.3e-38 164.5 276 45.3
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 6.6e-38 162.2 267 47.2
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-37 161.4 194 55.7
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.1e-37 161.4 192 56.2
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.1e-37 161.4 192 53.6
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.9e-37 160.6 142 65.5
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 4.7e-36 156.0 216 49.5
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 6.2e-36 155.6 227 48.0
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 6.2e-36 155.6 253 45.8
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.1e-35 154.8 217 50.2
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.4e-35 153.7 172 57.6
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 6.8e-35 152.1 109 78.0
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 6.8e-35 152.1 112 71.4
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.8e-35 152.1 230 50.9
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.6e-34 150.2 286 43.7
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 2.2e-33 147.1 186 49.5
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 2.9e-33 146.7 131 65.6
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 6.4e-33 145.6 126 64.3
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 6.4e-33 145.6 164 56.1
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 8.4e-33 145.2 110 72.7
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.7e-31 140.2 217 45.6
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 2.7e-31 140.2 201 46.3
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 7.8e-31 138.7 202 49.0
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 6.6e-30 135.6 193 48.2
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 8.7e-30 135.2 288 38.9
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 1.9e-29 134.0 151 56.3
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 1.9e-29 134.0 214 43.5
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 8.1e-28 128.6 111 69.4
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.4e-27 127.9 209 45.9
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 5.3e-27 125.9 88 78.4
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 5.8e-26 122.5 233 41.2
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 9.9e-26 121.7 202 43.6
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.0e-22 110.2 120 55.0
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.9e-22 109.8 233 42.1
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.3e-20 104.8 110 55.5
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 6.9e-19 99.0 150 50.0
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 8.4e-17 92.0 102 54.9
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-16 91.7 134 46.3
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.1e-16 91.7 136 41.9
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.4e-16 91.3 90 56.7
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 3.0e-14 83.6 97 46.4
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.9e-14 83.2 61 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 5.1e-14 82.8 153 38.6
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 5.1e-14 82.8 111 41.4
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 8.7e-14 82.0 60 80.0
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.3e-12 78.2 120 50.8
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.6e-12 77.8 117 47.9
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.2e-10 71.6 54 63.0
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.0e-09 68.6 46 84.8
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.3e-09 68.2 48 81.2
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.5e-07 60.1 71 53.5
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 5.1e-06 56.2 138 33.3


User provided reference genes

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