Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 3.8e-58 228.0 121 100.0
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 1.6e-27 126.3 126 61.9
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 4.6e-19 98.2 133 50.4
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 2.8e-16 89.0 106 54.7
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 6.2e-16 87.8 83 59.0
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 6.8e-15 84.3 81 58.0
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 2.0e-14 82.8 51 74.5
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 9.8e-14 80.5 86 54.7
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 9.8e-14 80.5 75 61.3
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 9.8e-14 80.5 94 52.1
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 1.7e-13 79.7 81 53.1
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.7e-13 79.7 124 41.9
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 1.7e-13 79.7 76 60.5
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 4.9e-13 78.2 88 51.1
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 6.4e-13 77.8 126 43.7
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 8.3e-13 77.4 81 55.6
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.4e-12 76.6 88 52.3
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 1.9e-12 76.3 115 47.8
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 1.9e-12 76.3 79 55.7
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 2.4e-12 75.9 80 55.0
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 4.1e-12 75.1 88 48.9
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.2e-11 73.6 64 59.4
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.6e-11 73.2 81 56.8
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 2.1e-11 72.8 129 37.2
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 2.1e-11 72.8 69 56.5
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 2.1e-11 72.8 98 45.9
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 2.7e-11 72.4 70 55.7
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 4.6e-11 71.6 129 36.4
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 4.6e-11 71.6 129 36.4
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 4.6e-11 71.6 70 54.3
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 6.0e-11 71.2 80 53.8
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 6.0e-11 71.2 80 53.8
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 7.8e-11 70.9 70 54.3
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 1.0e-10 70.5 86 48.8
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 1.0e-10 70.5 103 45.6
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 1.7e-10 69.7 87 44.8
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.7e-10 69.7 76 53.9
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 2.3e-10 69.3 75 53.3
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 2.3e-10 69.3 109 43.1
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 2.3e-10 69.3 78 50.0
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 2.3e-10 69.3 65 60.0
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 2.3e-10 69.3 78 51.3
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 2.3e-10 69.3 103 45.6
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 3.0e-10 68.9 80 52.5
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 6.6e-10 67.8 80 53.8
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 8.6e-10 67.4 78 50.0
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 8.6e-10 67.4 81 48.1
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 8.6e-10 67.4 80 48.8
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 8.6e-10 67.4 75 53.3
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 1.1e-09 67.0 78 47.4
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 1.1e-09 67.0 90 41.1
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 1.1e-09 67.0 76 47.4
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 1.1e-09 67.0 83 50.6
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 1.5e-09 66.6 79 49.4
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 2.5e-09 65.9 56 58.9
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 3.3e-09 65.5 75 50.7
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 3.3e-09 65.5 60 50.0
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 3.3e-09 65.5 60 50.0
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 3.3e-09 65.5 107 39.3
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 4.3e-09 65.1 64 54.7
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 4.3e-09 65.1 109 45.9
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 5.6e-09 64.7 77 51.9
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 5.6e-09 64.7 57 61.4
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 7.3e-09 64.3 84 44.0
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 7.3e-09 64.3 116 37.1
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 7.3e-09 64.3 132 34.1
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 9.5e-09 63.9 111 42.3
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 9.5e-09 63.9 73 46.6
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 9.5e-09 63.9 78 42.3
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 1.2e-08 63.5 51 60.8
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 1.2e-08 63.5 85 48.2
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 1.6e-08 63.2 51 60.8
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 2.1e-08 62.8 72 50.0
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.8e-08 62.4 51 58.8
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.8e-08 62.4 51 58.8
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 2.8e-08 62.4 51 58.8
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 2.8e-08 62.4 52 57.7
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 2.8e-08 62.4 83 48.2
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 3.6e-08 62.0 51 56.9
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 4.7e-08 61.6 51 58.8
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 4.7e-08 61.6 81 48.1
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 4.7e-08 61.6 102 43.1
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 6.2e-08 61.2 51 56.9
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 6.2e-08 61.2 51 56.9
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 6.2e-08 61.2 51 58.8
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 6.2e-08 61.2 76 50.0
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 8.1e-08 60.8 110 39.1
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 8.1e-08 60.8 60 46.7
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 1.1e-07 60.5 78 46.2
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 1.4e-07 60.1 67 50.7
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 1.4e-07 60.1 51 56.9
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 1.8e-07 59.7 76 47.4
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 1.8e-07 59.7 76 46.1
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 1.8e-07 59.7 76 47.4
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 1.8e-07 59.7 76 47.4
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 1.8e-07 59.7 51 56.9
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.8e-07 59.7 135 32.6
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 2.3e-07 59.3 84 48.8
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 2.3e-07 59.3 58 46.6
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 4.0e-07 58.5 51 52.9
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 5.2e-07 58.2 106 38.7
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 5.2e-07 58.2 76 44.7
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 5.2e-07 58.2 73 46.6
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 6.8e-07 57.8 75 42.7
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 6.8e-07 57.8 75 42.7
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 8.9e-07 57.4 76 44.7
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 8.9e-07 57.4 69 43.5
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 8.9e-07 57.4 55 45.5
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.2e-06 57.0 53 54.7
Peaxi162Scf00071g00035 Petunia axillaris HOM05D001624 ORTHO05D001530 1.5e-06 56.6 94 35.1
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 2.0e-06 56.2 53 50.9
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 2.0e-06 56.2 51 52.9
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 2.0e-06 56.2 82 45.1
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 2.0e-06 56.2 69 50.7
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 2.6e-06 55.8 53 50.9
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 7.6e-06 54.3 80 38.8
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 9.9e-06 53.9 79 41.8
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 9.9e-06 53.9 59 45.8


User provided reference genes

Program Settings