Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold334G49074 Striga asiatica HOM05D017014 ORTHO05D051419 5.4e-81 304.3 157 100.0
SGA_v2.0_scaffold2892G54236 Striga asiatica HOM05D017014 ORTHO05D051419 1.5e-46 189.9 111 88.3
SGA_v2.0_scaffold21G09421 Striga asiatica HOM05D000163 ORTHO05D000219 9.8e-14 80.9 48 85.4
Oeu000308.1 Olea europaea HOM05D000163 ORTHO05D000219 5.9e-11 71.6 43 74.4
MSTRG.10541 Avicennia marina HOM05D000163 ORTHO05D000219 1.0e-10 70.9 45 73.3
MSTRG.26446 Avicennia marina HOM05D000163 ORTHO05D000219 2.9e-10 69.3 43 74.4
Solyc07g040940.3 Solanum lycopersicum HOM05D000163 ORTHO05D000219 1.9e-09 66.6 45 71.1
SGA_v2.0_scaffold8G04204 Striga asiatica HOM05D000037 ORTHO05D001500 2.5e-09 66.2 66 56.1
Nitab4.5_0006861g0020 Nicotiana tabacum HOM05D000163 ORTHO05D000219 5.6e-09 65.1 45 68.9
Sopen07g020010 Solanum pennellii HOM05D000163 ORTHO05D000219 1.2e-08 63.9 45 68.9
Lalb_Chr12g0199901 Lupinus albus HOM05D000163 ORTHO05D000219 2.8e-08 62.8 45 66.7
CAN.G235.9 Capsicum annuum HOM05D000163 ORTHO05D000219 3.6e-08 62.4 45 64.4
PGSC0003DMG400010710 Solanum tuberosum HOM05D000163 ORTHO05D000219 3.6e-08 62.4 45 68.9
Migut.L01524 Erythranthe guttata HOM05D000163 ORTHO05D000219 1.0e-07 60.8 43 65.1
Medtr4g125930 Medicago truncatula HOM05D000163 ORTHO05D000219 1.0e-07 60.8 45 66.7
Potri.006G147000 Populus trichocarpa HOM05D000163 ORTHO05D000219 1.0e-07 60.8 45 62.2
Duzib150G0379 Durio zibethinus HOM05D000163 ORTHO05D000219 1.4e-07 60.5 45 62.2
Hma1.2p1_0169F.1_g074840 Hydrangea macrophylla HOM05D000163 ORTHO05D000219 1.8e-07 60.1 43 65.1
GSVIVG01015162001 Vitis vinifera HOM05D000163 ORTHO05D000219 1.8e-07 60.1 45 64.4
Manes.03G036500 Manihot esculenta HOM05D000163 ORTHO05D000219 2.3e-07 59.7 45 64.4
PGR142G0319 Punica granatum HOM05D000163 ORTHO05D000219 2.3e-07 59.7 45 60.0
Gohir.A06G073800 Gossypium hirsutum HOM05D000163 ORTHO05D000219 4.0e-07 58.9 45 62.2
Gohir.D06G072700 Gossypium hirsutum HOM05D000163 ORTHO05D000219 4.0e-07 58.9 45 62.2
Peaxi162Scf00498g00431 Petunia axillaris HOM05D000163 ORTHO05D000219 4.0e-07 58.9 45 62.2
AUR62029028 Chenopodium quinoa HOM05D000163 ORTHO05D000219 5.2e-07 58.5 48 60.4
AUR62033923 Chenopodium quinoa HOM05D000163 ORTHO05D000219 5.2e-07 58.5 48 60.4
COL.COLO4_18164 Corchorus olitorius HOM05D000163 ORTHO05D000219 5.2e-07 58.5 45 62.2
Thecc.09G083900 Theobroma cacao HOM05D000163 ORTHO05D000219 5.2e-07 58.5 45 62.2
Lj4C290T4 Lonicera japonica HOM05D000163 ORTHO05D000219 6.8e-07 58.2 45 62.2
Nn6g35542 Nelumbo nucifera HOM05D000163 ORTHO05D000219 6.8e-07 58.2 43 60.5
Nitab4.5_0002642g0130 Nicotiana tabacum HOM05D000163 ORTHO05D000219 6.8e-07 58.2 45 64.4
Phvul.003G134500 Phaseolus vulgaris HOM05D000163 ORTHO05D000219 6.8e-07 58.2 45 62.2
VMungo1215G0449 Vigna mungo HOM05D000163 ORTHO05D000219 6.8e-07 58.2 45 62.2
Cc06_g11690 Coffea canephora HOM05D000163 ORTHO05D000219 8.9e-07 57.8 43 65.1
DCAR_024716 Daucus carota HOM05D000163 ORTHO05D000219 8.9e-07 57.8 43 60.5
Glyma.17G052800 Glycine max HOM05D000163 ORTHO05D000219 8.9e-07 57.8 45 62.2
Rhsim05G0015500 Rhododendron simsii HOM05D000163 ORTHO05D000219 8.9e-07 57.8 45 62.2
CiPaw.03G212000 Carya illinoinensis HOM05D000163 ORTHO05D000219 1.2e-06 57.4 45 60.0
Rhsim05G0015100 Rhododendron simsii HOM05D000163 ORTHO05D000219 1.2e-06 57.4 45 62.2
vmacro17210 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 1.2e-06 57.4 45 60.0
Gorai.010G084700 Gossypium raimondii HOM05D000163 ORTHO05D000219 2.0e-06 56.6 45 60.0
PSO210G1411 Papaver somniferum HOM05D000163 ORTHO05D000219 2.0e-06 56.6 45 57.8
Dinv42344 Davidia involucrata HOM05D000163 ORTHO05D000219 2.6e-06 56.2 45 60.0
Zm00001eb385250 Zea mays HOM05D000163 ORTHO05D000219 2.6e-06 56.2 43 58.1
Ciclev10007527m.g Citrus clementina HOM05D000163 ORTHO05D000219 3.4e-06 55.8 45 57.8
Lj4g0012370 Lotus japonicus HOM05D000163 ORTHO05D000219 3.4e-06 55.8 45 62.2
Nitab4.5_0002824g0110 Nicotiana tabacum HOM05D000163 ORTHO05D000219 3.4e-06 55.8 45 60.0
Solyc12g008990.2 Solanum lycopersicum HOM05D000163 ORTHO05D000219 3.4e-06 55.8 45 57.8
THA.LOC104814012 Tarenaya hassleriana HOM05D000163 ORTHO05D000219 3.4e-06 55.8 45 60.0
TPR.G697 Trifolium pratense HOM05D000163 ORTHO05D000219 3.4e-06 55.8 45 62.2
vmacro17143 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 3.4e-06 55.8 45 57.8
vmacro17146 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 3.4e-06 55.8 45 62.2
Atru.chr7.1636 Acer truncatum HOM05D000163 ORTHO05D000219 4.4e-06 55.5 45 57.8
Ca_21294_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 4.4e-06 55.5 45 62.2
Eucgr.C00853 Eucalyptus grandis HOM05D000163 ORTHO05D000219 4.4e-06 55.5 45 62.2
FAN23G2704 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.4e-06 55.5 45 57.8
FAN26G0627 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.4e-06 55.5 45 57.8
FAN26G3256 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.4e-06 55.5 45 57.8
Glyma.13G106533 Glycine max HOM05D000163 ORTHO05D000219 4.4e-06 55.5 45 60.0
FvH4_1g07970 Fragaria vesca HOM05D000163 ORTHO05D000219 5.8e-06 55.1 45 57.8
FAN19G2901 Fragaria x ananassa HOM05D000163 ORTHO05D000219 5.8e-06 55.1 45 57.8
RcHm_v2.0_Chr7g0232521 Rosa chinensis HOM05D000163 ORTHO05D000962 5.8e-06 55.1 45 57.8
arahy.Tifrunner.gnm1.ann1.SWIT4Z Arachis hypogaea HOM05D000163 ORTHO05D000219 7.5e-06 54.7 45 62.2
EL10Ac8g19170 Beta vulgaris HOM05D000163 ORTHO05D000219 7.5e-06 54.7 48 56.2
CANSAT56G4029 Cannabis sativa HOM05D000163 ORTHO05D000219 7.5e-06 54.7 45 57.8
QL02p061918 Quercus lobata HOM05D000163 ORTHO05D000219 7.5e-06 54.7 45 60.0
Nitab4.5_0002642g0080 Nicotiana tabacum HOM05D000163 ORTHO05D000219 9.8e-06 54.3 45 60.0
TWI34G1142 Tripterygium wilfordii HOM05D000163 ORTHO05D000219 9.8e-06 54.3 45 55.6


User provided reference genes

Program Settings