Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 3.5e-86 321.6 167 100.0
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.3e-19 100.5 122 42.6
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.4e-18 96.3 122 43.4
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.0e-16 90.9 111 42.3
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.7e-16 90.1 106 42.5
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.2e-16 89.7 106 42.5
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 4.2e-15 85.5 103 51.5
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 5.5e-15 85.1 115 43.5
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 5.5e-15 85.1 108 45.4
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 7.2e-15 84.7 118 43.2
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 7.2e-15 84.7 124 40.3
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.6e-14 83.6 119 42.0
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.6e-14 83.6 115 40.9
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.1e-14 83.2 117 41.0
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 2.1e-14 83.2 121 40.5
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 3.6e-14 82.4 108 43.5
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 3.6e-14 82.4 115 42.6
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.6e-14 82.4 123 42.3
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.6e-14 82.4 140 38.6
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 4.7e-14 82.0 108 42.6
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.1e-14 81.6 117 40.2
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.0e-14 81.3 114 41.2
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.0e-13 80.9 112 39.3
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.0e-13 80.9 118 41.5
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.8e-13 80.1 117 42.7
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.8e-13 80.1 120 44.2
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.8e-13 80.1 115 42.6
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.8e-13 80.1 120 41.7
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.3e-13 79.7 118 40.7
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.3e-13 79.7 101 42.6
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.3e-13 79.7 120 40.0
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 3.0e-13 79.3 104 44.2
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.0e-13 79.3 102 48.0
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.0e-13 79.0 110 47.3
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 5.2e-13 78.6 93 45.2
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.2e-12 77.4 123 41.5
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.5e-12 77.0 113 39.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 2.6e-12 76.3 133 41.4
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 3.3e-12 75.9 118 40.7
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 3.3e-12 75.9 124 37.9
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.4e-12 75.5 129 39.5
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 4.4e-12 75.5 109 37.6
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.7e-12 75.1 118 40.7
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 5.7e-12 75.1 87 50.6
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 7.5e-12 74.7 117 37.6
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 9.7e-12 74.3 106 39.6
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.7e-12 74.3 120 40.8
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 9.7e-12 74.3 121 41.3
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.3e-11 73.9 108 38.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.3e-11 73.9 118 39.8
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.3e-11 73.9 108 42.6
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.7e-11 73.6 100 42.0
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.7e-11 73.6 100 39.0
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.7e-11 73.6 113 37.2
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.7e-11 73.6 123 39.0
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.7e-11 73.6 135 37.8
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 2.2e-11 73.2 111 38.7
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.2e-11 73.2 115 37.4
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.8e-11 72.8 124 38.7
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 2.8e-11 72.8 108 37.0
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.8e-11 72.8 100 40.0
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.7e-11 72.4 105 40.0
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 3.7e-11 72.4 108 35.2
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 4.8e-11 72.0 117 37.6
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 6.3e-11 71.6 120 39.2
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 8.2e-11 71.2 112 41.1
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 1.1e-10 70.9 125 36.8
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.1e-10 70.9 110 40.9
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.8e-10 70.1 116 39.7
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.4e-10 69.7 130 37.7
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-10 69.3 120 39.2
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 4.1e-10 68.9 120 38.3
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.1e-10 68.9 130 39.2
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.3e-10 68.6 130 37.7
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 5.3e-10 68.6 123 39.0
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.3e-10 68.6 101 42.6
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 7.0e-10 68.2 110 40.0
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 7.0e-10 68.2 128 37.5
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.1e-10 67.8 111 40.5
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 9.1e-10 67.8 113 38.9
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 9.1e-10 67.8 124 36.3
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.2e-09 67.4 109 42.2
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.0e-09 66.6 124 37.1
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 2.7e-09 66.2 113 33.6
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 4.5e-09 65.5 112 42.0
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 4.5e-09 65.5 126 34.9
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 5.9e-09 65.1 103 34.0
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 5.9e-09 65.1 118 36.4
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 7.7e-09 64.7 105 37.1
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.0e-08 64.3 130 34.6
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-08 63.9 105 39.0
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-08 63.9 118 36.4
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-08 63.5 116 37.9
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 2.2e-08 63.2 103 36.9
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.2e-08 63.2 103 35.9
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 3.8e-08 62.4 104 38.5
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 3.8e-08 62.4 123 37.4
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.0e-08 62.0 114 38.6
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 6.5e-08 61.6 123 35.8
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 8.5e-08 61.2 121 35.5
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.1e-07 60.8 117 35.9
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.1e-07 60.8 119 36.1
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.5e-07 60.5 125 35.2
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 3.2e-07 59.3 122 35.2
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 3.2e-07 59.3 133 33.1
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 3.2e-07 59.3 112 34.8
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 4.2e-07 58.9 104 34.6
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 4.2e-07 58.9 122 35.2
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 4.2e-07 58.9 122 35.2
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 5.5e-07 58.5 78 38.5
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 7.2e-07 58.2 126 34.9
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-07 58.2 111 36.9
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-07 58.2 110 37.3
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-07 58.2 110 37.3
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 9.4e-07 57.8 108 38.0
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 9.4e-07 57.8 108 38.0
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 9.4e-07 57.8 109 34.9
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.4e-07 57.8 108 36.1
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.2e-06 57.4 122 36.9
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-06 57.4 126 34.9
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.6e-06 57.0 103 35.0
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.6e-06 57.0 120 34.2
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-06 57.0 109 37.6
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.6e-06 57.0 107 36.4
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.6e-06 57.0 103 40.8
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 2.1e-06 56.6 107 35.5
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 2.1e-06 56.6 107 35.5
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 2.1e-06 56.6 107 35.5
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.1e-06 56.6 122 36.1
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.7e-06 56.2 119 31.9
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.7e-06 56.2 62 45.2
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.7e-06 56.2 126 34.1
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 2.7e-06 56.2 104 40.4
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.7e-06 56.2 109 39.4
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.6e-06 55.8 102 31.4
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 3.6e-06 55.8 119 31.9
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 6.1e-06 55.1 137 32.8
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 6.1e-06 55.1 121 33.9
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 6.1e-06 55.1 121 33.9
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 6.1e-06 55.1 121 33.9


User provided reference genes

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